Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NKX3-1Q99801 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NKX3-1Q99801 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC14.17□□□□□ -0.14
NKX3-1Q99801 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC14.17□□□□□ -0.14
NKX3-1Q99801 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NKX3-1Q99801 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC14.17□□□□□ -0.14
NKX3-1Q99801 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NKX3-1Q99801 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
NKX3-1Q99801 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
NKX3-1Q99801 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
NKX3-1Q99801 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
NKX3-1Q99801 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NKX3-1Q99801 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
NKX3-1Q99801 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NKX3-1Q99801 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NKX3-1Q99801 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
NKX3-1Q99801 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
NKX3-1Q99801 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
NKX3-1Q99801 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC14.17□□□□□ -0.14
NKX3-1Q99801 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NKX3-1Q99801 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
NKX3-1Q99801 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
NKX3-1Q99801 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC14.17□□□□□ -0.14
NKX3-1Q99801 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC14.17□□□□□ -0.14
NKX3-1Q99801 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC14.17□□□□□ -0.14
NKX3-1Q99801 AL662844.1-201ENST00000546340 181 ntBASIC14.17□□□□□ -0.14
NKX3-1Q99801 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC14.17□□□□□ -0.14
NKX3-1Q99801 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC14.17□□□□□ -0.14
NKX3-1Q99801 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC14.17□□□□□ -0.14
NKX3-1Q99801 AC104692.2-201ENST00000603054 253 ntBASIC14.17□□□□□ -0.14
NKX3-1Q99801 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC14.17□□□□□ -0.14
NKX3-1Q99801 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
NKX3-1Q99801 BSG-214ENST00000614867 960 ntTSL 3 BASIC14.17□□□□□ -0.14
NKX3-1Q99801 AC107918.4-202ENST00000641623 219 ntBASIC14.17□□□□□ -0.14
NKX3-1Q99801 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
NKX3-1Q99801 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
NKX3-1Q99801 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC14.17□□□□□ -0.14
NKX3-1Q99801 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC14.17□□□□□ -0.14
NKX3-1Q99801 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC14.17□□□□□ -0.14
NKX3-1Q99801 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NKX3-1Q99801 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
NKX3-1Q99801 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
NKX3-1Q99801 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NKX3-1Q99801 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
NKX3-1Q99801 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
NKX3-1Q99801 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NKX3-1Q99801 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NKX3-1Q99801 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
NKX3-1Q99801 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
NKX3-1Q99801 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NKX3-1Q99801 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NKX3-1Q99801 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.16□□□□□ -0.14
NKX3-1Q99801 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC14.16□□□□□ -0.14
NKX3-1Q99801 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
NKX3-1Q99801 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
NKX3-1Q99801 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
NKX3-1Q99801 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NKX3-1Q99801 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC14.16□□□□□ -0.14
NKX3-1Q99801 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
NKX3-1Q99801 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC14.16□□□□□ -0.14
NKX3-1Q99801 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC14.16□□□□□ -0.14
NKX3-1Q99801 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
NKX3-1Q99801 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NKX3-1Q99801 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NKX3-1Q99801 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NKX3-1Q99801 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NKX3-1Q99801 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NKX3-1Q99801 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NKX3-1Q99801 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NKX3-1Q99801 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC14.16□□□□□ -0.14
NKX3-1Q99801 AC073621.1-201ENST00000392730 636 ntBASIC14.16□□□□□ -0.14
NKX3-1Q99801 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NKX3-1Q99801 MRPL3P1-201ENST00000400109 1033 ntBASIC14.16□□□□□ -0.14
NKX3-1Q99801 HIST2H3DP1-201ENST00000401004 416 ntBASIC14.16□□□□□ -0.14
NKX3-1Q99801 LAGE3P1-201ENST00000425356 484 ntBASIC14.16□□□□□ -0.14
NKX3-1Q99801 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC14.16□□□□□ -0.14
NKX3-1Q99801 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC14.16□□□□□ -0.14
NKX3-1Q99801 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC14.16□□□□□ -0.14
NKX3-1Q99801 AF186996.4-201ENST00000467186 377 ntBASIC14.16□□□□□ -0.14
NKX3-1Q99801 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC14.16□□□□□ -0.14
NKX3-1Q99801 AC073648.2-201ENST00000510116 352 ntBASIC14.16□□□□□ -0.14
NKX3-1Q99801 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
NKX3-1Q99801 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC14.16□□□□□ -0.14
NKX3-1Q99801 GGTLC5P-201ENST00000617623 998 ntBASIC14.16□□□□□ -0.14
NKX3-1Q99801 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
NKX3-1Q99801 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NKX3-1Q99801 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC14.16□□□□□ -0.14
NKX3-1Q99801 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC14.16□□□□□ -0.14
NKX3-1Q99801 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NKX3-1Q99801 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NKX3-1Q99801 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NKX3-1Q99801 AP002414.3-201ENST00000589352 1468 ntBASIC14.16□□□□□ -0.14
NKX3-1Q99801 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NKX3-1Q99801 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC14.16□□□□□ -0.14
NKX3-1Q99801 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC14.16□□□□□ -0.14
NKX3-1Q99801 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
NKX3-1Q99801 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC14.16□□□□□ -0.14
NKX3-1Q99801 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
NKX3-1Q99801 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC14.16□□□□□ -0.14
NKX3-1Q99801 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms