Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
RPL39P62891 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC11.48□□□□□ -0.57
RPL39P62891 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC11.48□□□□□ -0.57
RPL39P62891 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC11.48□□□□□ -0.57
RPL39P62891 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC11.48□□□□□ -0.57
RPL39P62891 DRAXINP1-201ENST00000437611 948 ntBASIC11.48□□□□□ -0.57
RPL39P62891 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 LINC00265-3P-201ENST00000447588 903 ntBASIC11.48□□□□□ -0.57
RPL39P62891 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC11.48□□□□□ -0.57
RPL39P62891 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 AC074051.2-201ENST00000565115 352 ntBASIC11.48□□□□□ -0.57
RPL39P62891 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC11.48□□□□□ -0.57
RPL39P62891 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC11.48□□□□□ -0.57
RPL39P62891 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
RPL39P62891 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC11.48□□□□□ -0.57
RPL39P62891 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC11.48□□□□□ -0.57
RPL39P62891 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC11.48□□□□□ -0.57
RPL39P62891 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 MED25-212ENST00000618715 1467 ntTSL 5 BASIC11.48□□□□□ -0.57
RPL39P62891 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC11.48□□□□□ -0.57
RPL39P62891 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC11.48□□□□□ -0.57
RPL39P62891 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC11.48□□□□□ -0.57
RPL39P62891 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 TCAF2P1-201ENST00000291129 2421 ntBASIC11.48□□□□□ -0.57
RPL39P62891 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC11.48□□□□□ -0.57
RPL39P62891 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC11.48□□□□□ -0.57
RPL39P62891 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC11.48□□□□□ -0.57
RPL39P62891 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC11.48□□□□□ -0.57
RPL39P62891 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
RPL39P62891 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC11.47□□□□□ -0.57
RPL39P62891 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC11.47□□□□□ -0.57
RPL39P62891 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
RPL39P62891 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
RPL39P62891 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC11.47□□□□□ -0.57
RPL39P62891 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
RPL39P62891 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
RPL39P62891 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC11.47□□□□□ -0.57
RPL39P62891 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
RPL39P62891 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC11.47□□□□□ -0.57
RPL39P62891 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC11.47□□□□□ -0.57
RPL39P62891 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC11.47□□□□□ -0.57
RPL39P62891 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
RPL39P62891 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
RPL39P62891 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
RPL39P62891 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
RPL39P62891 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
RPL39P62891 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC11.47□□□□□ -0.57
RPL39P62891 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
RPL39P62891 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
RPL39P62891 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC11.47□□□□□ -0.57
RPL39P62891 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
RPL39P62891 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC11.47□□□□□ -0.57
RPL39P62891 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC11.47□□□□□ -0.57
RPL39P62891 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
RPL39P62891 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
RPL39P62891 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
RPL39P62891 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
RPL39P62891 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
RPL39P62891 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
RPL39P62891 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC11.47□□□□□ -0.57
RPL39P62891 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
RPL39P62891 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
RPL39P62891 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC11.47□□□□□ -0.57
RPL39P62891 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC11.47□□□□□ -0.57
RPL39P62891 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC11.47□□□□□ -0.57
RPL39P62891 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC11.47□□□□□ -0.57
RPL39P62891 AC087641.1-201ENST00000557561 1021 ntBASIC11.47□□□□□ -0.57
RPL39P62891 AL139424.1-201ENST00000607572 797 ntBASIC11.47□□□□□ -0.57
RPL39P62891 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
RPL39P62891 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms