Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LMO4P61968 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC13.17□□□□□ -0.3
LMO4P61968 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
LMO4P61968 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC13.17□□□□□ -0.3
LMO4P61968 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
LMO4P61968 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC13.17□□□□□ -0.3
LMO4P61968 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LMO4P61968 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LMO4P61968 AC006449.6-201ENST00000612330 2296 ntBASIC13.16□□□□□ -0.3
LMO4P61968 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LMO4P61968 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LMO4P61968 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
LMO4P61968 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC13.16□□□□□ -0.3
LMO4P61968 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LMO4P61968 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LMO4P61968 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LMO4P61968 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LMO4P61968 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
LMO4P61968 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LMO4P61968 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC13.16□□□□□ -0.3
LMO4P61968 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
LMO4P61968 AC079776.1-201ENST00000401540 1152 ntBASIC13.16□□□□□ -0.3
LMO4P61968 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
LMO4P61968 TOMM22P5-201ENST00000416399 439 ntBASIC13.16□□□□□ -0.3
LMO4P61968 USP40-206ENST00000443711 628 ntTSL 2 BASIC13.16□□□□□ -0.3
LMO4P61968 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC13.16□□□□□ -0.3
LMO4P61968 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC13.16□□□□□ -0.3
LMO4P61968 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC13.16□□□□□ -0.3
LMO4P61968 FUZ-207ENST00000526575 482 ntTSL 4 BASIC13.16□□□□□ -0.3
LMO4P61968 AC106886.1-201ENST00000568660 600 ntBASIC13.16□□□□□ -0.3
LMO4P61968 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
LMO4P61968 AL450472.2-201ENST00000603663 1156 ntBASIC13.16□□□□□ -0.3
LMO4P61968 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LMO4P61968 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC13.16□□□□□ -0.3
LMO4P61968 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC13.16□□□□□ -0.3
LMO4P61968 AL033527.5-201ENST00000641382 801 ntBASIC13.16□□□□□ -0.3
LMO4P61968 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LMO4P61968 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LMO4P61968 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LMO4P61968 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LMO4P61968 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
LMO4P61968 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC13.16□□□□□ -0.3
LMO4P61968 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC13.16□□□□□ -0.3
LMO4P61968 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LMO4P61968 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LMO4P61968 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
LMO4P61968 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LMO4P61968 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
LMO4P61968 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
LMO4P61968 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
LMO4P61968 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
LMO4P61968 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LMO4P61968 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC13.15□□□□□ -0.3
LMO4P61968 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC13.15□□□□□ -0.3
LMO4P61968 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LMO4P61968 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
LMO4P61968 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
LMO4P61968 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC13.15□□□□□ -0.3
LMO4P61968 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
LMO4P61968 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LMO4P61968 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
LMO4P61968 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
LMO4P61968 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LMO4P61968 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC13.15□□□□□ -0.3
LMO4P61968 AC136604.1-201ENST00000418535 575 ntBASIC13.15□□□□□ -0.3
LMO4P61968 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC13.15□□□□□ -0.3
LMO4P61968 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC13.15□□□□□ -0.3
LMO4P61968 TTTY23B-201ENST00000442790 549 ntBASIC13.15□□□□□ -0.3
LMO4P61968 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
LMO4P61968 IGHV3-71-201ENST00000523324 359 ntBASIC13.15□□□□□ -0.3
LMO4P61968 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC13.15□□□□□ -0.3
LMO4P61968 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC13.15□□□□□ -0.3
LMO4P61968 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC13.15□□□□□ -0.3
LMO4P61968 HILS1-202ENST00000545329 423 ntBASIC13.15□□□□□ -0.3
LMO4P61968 AC036164.1-201ENST00000570544 333 ntBASIC13.15□□□□□ -0.3
LMO4P61968 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC13.15□□□□□ -0.3
LMO4P61968 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
LMO4P61968 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC13.15□□□□□ -0.3
LMO4P61968 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LMO4P61968 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC13.15□□□□□ -0.3
LMO4P61968 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC13.15□□□□□ -0.3
LMO4P61968 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC13.15□□□□□ -0.3
LMO4P61968 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LMO4P61968 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
LMO4P61968 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
LMO4P61968 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC13.15□□□□□ -0.3
LMO4P61968 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LMO4P61968 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
LMO4P61968 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC13.15□□□□□ -0.3
LMO4P61968 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC13.15□□□□□ -0.3
LMO4P61968 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC13.15□□□□□ -0.31
LMO4P61968 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.31
LMO4P61968 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
LMO4P61968 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LMO4P61968 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
LMO4P61968 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
LMO4P61968 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LMO4P61968 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC13.14□□□□□ -0.31
LMO4P61968 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LMO4P61968 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms