Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC148477.4-201ENST00000613430 1793 ntBASIC19.17■□□□□ 0.66
BRCA1P38398 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
BRCA1P38398 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
BRCA1P38398 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
BRCA1P38398 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
BRCA1P38398 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC19.17■□□□□ 0.66
BRCA1P38398 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
BRCA1P38398 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
BRCA1P38398 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
BRCA1P38398 CRCP-204ENST00000398684 492 ntTSL 2 BASIC19.17■□□□□ 0.66
BRCA1P38398 CEP164P1-201ENST00000455142 418 ntBASIC19.17■□□□□ 0.66
BRCA1P38398 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC19.17■□□□□ 0.66
BRCA1P38398 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC19.17■□□□□ 0.66
BRCA1P38398 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
BRCA1P38398 RN7SL736P-201ENST00000613111 269 ntBASIC19.17■□□□□ 0.66
BRCA1P38398 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
BRCA1P38398 AC087289.5-201ENST00000586076 3175 ntBASIC19.17■□□□□ 0.66
BRCA1P38398 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC19.17■□□□□ 0.66
BRCA1P38398 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC19.17■□□□□ 0.66
BRCA1P38398 NF2-208ENST00000403435 2568 ntTSL 5 BASIC19.16■□□□□ 0.66
BRCA1P38398 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC19.16■□□□□ 0.66
BRCA1P38398 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
BRCA1P38398 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC19.16■□□□□ 0.66
BRCA1P38398 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
BRCA1P38398 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
BRCA1P38398 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.16■□□□□ 0.66
BRCA1P38398 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC19.16■□□□□ 0.66
BRCA1P38398 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
BRCA1P38398 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
BRCA1P38398 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
BRCA1P38398 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC19.16■□□□□ 0.66
BRCA1P38398 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
BRCA1P38398 ATP6V0CP2-201ENST00000469409 207 ntBASIC19.16■□□□□ 0.66
BRCA1P38398 TBCB-211ENST00000589996 724 ntTSL 3 BASIC19.16■□□□□ 0.66
BRCA1P38398 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
BRCA1P38398 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
BRCA1P38398 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
BRCA1P38398 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC19.16■□□□□ 0.66
BRCA1P38398 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
BRCA1P38398 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
BRCA1P38398 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC19.16■□□□□ 0.66
BRCA1P38398 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
BRCA1P38398 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
BRCA1P38398 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
BRCA1P38398 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
BRCA1P38398 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
BRCA1P38398 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
BRCA1P38398 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
BRCA1P38398 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
BRCA1P38398 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
BRCA1P38398 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
BRCA1P38398 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
BRCA1P38398 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC19.16■□□□□ 0.66
BRCA1P38398 HNRNPA1P63-201ENST00000427917 963 ntBASIC19.16■□□□□ 0.66
BRCA1P38398 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC19.16■□□□□ 0.66
BRCA1P38398 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC19.16■□□□□ 0.66
BRCA1P38398 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC19.16■□□□□ 0.66
BRCA1P38398 ZACNP1-201ENST00000612259 710 ntBASIC19.16■□□□□ 0.66
BRCA1P38398 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
BRCA1P38398 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
BRCA1P38398 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC19.15■□□□□ 0.66
BRCA1P38398 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.15■□□□□ 0.66
BRCA1P38398 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC19.15■□□□□ 0.66
BRCA1P38398 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
BRCA1P38398 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
BRCA1P38398 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
BRCA1P38398 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
BRCA1P38398 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
BRCA1P38398 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
BRCA1P38398 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
BRCA1P38398 HIST2H2BB-201ENST00000449108 381 ntBASIC19.15■□□□□ 0.66
BRCA1P38398 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
BRCA1P38398 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC19.15■□□□□ 0.66
BRCA1P38398 RN7SL48P-201ENST00000579283 293 ntBASIC19.15■□□□□ 0.66
BRCA1P38398 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
BRCA1P38398 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
BRCA1P38398 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
BRCA1P38398 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
BRCA1P38398 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
BRCA1P38398 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
BRCA1P38398 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
BRCA1P38398 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.66
BRCA1P38398 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
BRCA1P38398 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
BRCA1P38398 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC19.14■□□□□ 0.65
BRCA1P38398 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC19.14■□□□□ 0.65
BRCA1P38398 KRT18P66-201ENST00000452970 1269 ntBASIC19.14■□□□□ 0.65
BRCA1P38398 MIR6756-201ENST00000616240 63 ntBASIC19.14■□□□□ 0.65
BRCA1P38398 GCK-202ENST00000345378 2421 ntTSL 2 BASIC19.14■□□□□ 0.65
BRCA1P38398 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
BRCA1P38398 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC19.14■□□□□ 0.65
BRCA1P38398 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
BRCA1P38398 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC19.14■□□□□ 0.65
BRCA1P38398 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
BRCA1P38398 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC19.14■□□□□ 0.65
BRCA1P38398 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
BRCA1P38398 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
BRCA1P38398 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
BRCA1P38398 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC19.14■□□□□ 0.65
BRCA1P38398 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms