Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC18.43■□□□□ 0.54
SMARCA1P28370 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC18.43■□□□□ 0.54
SMARCA1P28370 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
SMARCA1P28370 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC18.43■□□□□ 0.54
SMARCA1P28370 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC18.43■□□□□ 0.54
SMARCA1P28370 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
SMARCA1P28370 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
SMARCA1P28370 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SMARCA1P28370 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
SMARCA1P28370 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
SMARCA1P28370 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC18.43■□□□□ 0.54
SMARCA1P28370 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC18.43■□□□□ 0.54
SMARCA1P28370 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SMARCA1P28370 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC18.43■□□□□ 0.54
SMARCA1P28370 UGT1A2P-201ENST00000454886 866 ntBASIC18.43■□□□□ 0.54
SMARCA1P28370 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
SMARCA1P28370 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SMARCA1P28370 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC18.43■□□□□ 0.54
SMARCA1P28370 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC18.43■□□□□ 0.54
SMARCA1P28370 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
SMARCA1P28370 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SMARCA1P28370 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
SMARCA1P28370 5S_rRNA.22-201ENST00000614916 106 ntBASIC18.43■□□□□ 0.54
SMARCA1P28370 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
SMARCA1P28370 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SMARCA1P28370 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC18.43■□□□□ 0.54
SMARCA1P28370 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
SMARCA1P28370 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
SMARCA1P28370 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
SMARCA1P28370 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
SMARCA1P28370 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SMARCA1P28370 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SMARCA1P28370 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
SMARCA1P28370 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SMARCA1P28370 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SMARCA1P28370 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SMARCA1P28370 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMARCA1P28370 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC18.42■□□□□ 0.54
SMARCA1P28370 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
SMARCA1P28370 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC18.42■□□□□ 0.54
SMARCA1P28370 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMARCA1P28370 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC18.42■□□□□ 0.54
SMARCA1P28370 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMARCA1P28370 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMARCA1P28370 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.42■□□□□ 0.54
SMARCA1P28370 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SMARCA1P28370 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC18.42■□□□□ 0.54
SMARCA1P28370 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SMARCA1P28370 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SMARCA1P28370 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMARCA1P28370 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMARCA1P28370 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SMARCA1P28370 TARDBPP1-201ENST00000442013 1203 ntBASIC18.42■□□□□ 0.54
SMARCA1P28370 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC18.42■□□□□ 0.54
SMARCA1P28370 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC18.42■□□□□ 0.54
SMARCA1P28370 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC18.42■□□□□ 0.54
SMARCA1P28370 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC18.42■□□□□ 0.54
SMARCA1P28370 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SMARCA1P28370 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC18.42■□□□□ 0.54
SMARCA1P28370 AC092337.1-201ENST00000568699 1129 ntBASIC18.42■□□□□ 0.54
SMARCA1P28370 AC004840.1-201ENST00000636359 365 ntBASIC18.42■□□□□ 0.54
SMARCA1P28370 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SMARCA1P28370 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.42■□□□□ 0.54
SMARCA1P28370 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC18.42■□□□□ 0.54
SMARCA1P28370 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC18.42■□□□□ 0.54
SMARCA1P28370 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SMARCA1P28370 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC18.42■□□□□ 0.54
SMARCA1P28370 ACE-203ENST00000413513 2237 ntTSL 2 BASIC18.42■□□□□ 0.54
SMARCA1P28370 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMARCA1P28370 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SMARCA1P28370 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMARCA1P28370 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMARCA1P28370 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC18.42■□□□□ 0.54
SMARCA1P28370 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC18.42■□□□□ 0.54
SMARCA1P28370 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SMARCA1P28370 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SMARCA1P28370 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
SMARCA1P28370 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMARCA1P28370 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC18.41■□□□□ 0.54
SMARCA1P28370 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC18.41■□□□□ 0.54
SMARCA1P28370 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMARCA1P28370 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC18.41■□□□□ 0.54
SMARCA1P28370 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMARCA1P28370 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMARCA1P28370 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC18.41■□□□□ 0.54
SMARCA1P28370 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMARCA1P28370 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMARCA1P28370 RAC2-204ENST00000406508 893 ntTSL 5 BASIC18.41■□□□□ 0.54
SMARCA1P28370 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC18.41■□□□□ 0.54
SMARCA1P28370 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC18.41■□□□□ 0.54
SMARCA1P28370 TSPY16P-201ENST00000449843 468 ntBASIC18.41■□□□□ 0.54
SMARCA1P28370 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC18.41■□□□□ 0.54
SMARCA1P28370 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC18.41■□□□□ 0.54
SMARCA1P28370 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC18.41■□□□□ 0.54
SMARCA1P28370 HFE2-206ENST00000634927 506 ntTSL 4 BASIC18.41■□□□□ 0.54
SMARCA1P28370 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
SMARCA1P28370 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMARCA1P28370 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
SMARCA1P28370 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC18.41■□□□□ 0.54
SMARCA1P28370 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms