Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 AP003733.1-201ENST00000491725 852 ntBASIC12.22□□□□□ -0.45
HLA-DQA1P01909 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 GCSHP2-201ENST00000560971 527 ntBASIC12.22□□□□□ -0.45
HLA-DQA1P01909 ARL16-209ENST00000573715 763 ntTSL 3 BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 ARL16-211ENST00000576135 694 ntTSL 3 BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 AL138966.2-201ENST00000621997 464 ntBASIC12.22□□□□□ -0.45
HLA-DQA1P01909 AL031432.5-201ENST00000641059 760 ntBASIC12.22□□□□□ -0.45
HLA-DQA1P01909 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 AC005252.3-201ENST00000623855 2258 ntBASIC12.21□□□□□ -0.45
HLA-DQA1P01909 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 AC003669.1-201ENST00000334569 611 ntBASIC12.21□□□□□ -0.45
HLA-DQA1P01909 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 BX664615.1-201ENST00000443558 458 ntBASIC12.21□□□□□ -0.45
HLA-DQA1P01909 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 P4HB-223ENST00000576390 439 ntTSL 4 BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 AC139887.4-201ENST00000607877 719 ntBASIC12.21□□□□□ -0.45
HLA-DQA1P01909 AC012306.2-201ENST00000609350 630 ntBASIC12.21□□□□□ -0.45
HLA-DQA1P01909 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
HLA-DQA1P01909 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
HLA-DQA1P01909 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.46
HLA-DQA1P01909 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC12.21□□□□□ -0.46
HLA-DQA1P01909 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC12.21□□□□□ -0.46
HLA-DQA1P01909 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
HLA-DQA1P01909 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
HLA-DQA1P01909 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC12.21□□□□□ -0.46
HLA-DQA1P01909 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
HLA-DQA1P01909 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC12.21□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms