Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
NKX3-1Q99801 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC14.2□□□□□ -0.14
NKX3-1Q99801 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.2□□□□□ -0.14
NKX3-1Q99801 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
NKX3-1Q99801 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
NKX3-1Q99801 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
NKX3-1Q99801 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
NKX3-1Q99801 AC067930.6-201ENST00000623257 4947 ntBASIC14.19□□□□□ -0.14
NKX3-1Q99801 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
NKX3-1Q99801 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
NKX3-1Q99801 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
NKX3-1Q99801 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC14.19□□□□□ -0.14
NKX3-1Q99801 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC14.19□□□□□ -0.14
NKX3-1Q99801 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
NKX3-1Q99801 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
NKX3-1Q99801 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
NKX3-1Q99801 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NKX3-1Q99801 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC14.19□□□□□ -0.14
NKX3-1Q99801 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NKX3-1Q99801 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC14.19□□□□□ -0.14
NKX3-1Q99801 AC136621.1-201ENST00000624017 2304 ntBASIC14.19□□□□□ -0.14
NKX3-1Q99801 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NKX3-1Q99801 SLC9A3P2-201ENST00000447821 2021 ntBASIC14.19□□□□□ -0.14
NKX3-1Q99801 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
NKX3-1Q99801 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NKX3-1Q99801 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
NKX3-1Q99801 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
NKX3-1Q99801 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC14.19□□□□□ -0.14
NKX3-1Q99801 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NKX3-1Q99801 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14.19□□□□□ -0.14
NKX3-1Q99801 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NKX3-1Q99801 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NKX3-1Q99801 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NKX3-1Q99801 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
NKX3-1Q99801 RAB17-203ENST00000409576 466 ntTSL 3 BASIC14.19□□□□□ -0.14
NKX3-1Q99801 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
NKX3-1Q99801 WDR53-204ENST00000433160 887 ntTSL 5 BASIC14.19□□□□□ -0.14
NKX3-1Q99801 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
NKX3-1Q99801 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC14.19□□□□□ -0.14
NKX3-1Q99801 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC14.19□□□□□ -0.14
NKX3-1Q99801 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC14.19□□□□□ -0.14
NKX3-1Q99801 AP002469.2-201ENST00000531724 424 ntBASIC14.19□□□□□ -0.14
NKX3-1Q99801 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC14.19□□□□□ -0.14
NKX3-1Q99801 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC14.19□□□□□ -0.14
NKX3-1Q99801 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
NKX3-1Q99801 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NKX3-1Q99801 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC14.19□□□□□ -0.14
NKX3-1Q99801 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NKX3-1Q99801 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NKX3-1Q99801 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
NKX3-1Q99801 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC14.19□□□□□ -0.14
NKX3-1Q99801 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
NKX3-1Q99801 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NKX3-1Q99801 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC14.19□□□□□ -0.14
NKX3-1Q99801 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC14.19□□□□□ -0.14
NKX3-1Q99801 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
NKX3-1Q99801 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
NKX3-1Q99801 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
NKX3-1Q99801 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC14.19□□□□□ -0.14
NKX3-1Q99801 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
NKX3-1Q99801 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NKX3-1Q99801 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NKX3-1Q99801 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.18□□□□□ -0.14
NKX3-1Q99801 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC14.18□□□□□ -0.14
NKX3-1Q99801 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
NKX3-1Q99801 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NKX3-1Q99801 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC14.18□□□□□ -0.14
NKX3-1Q99801 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.18□□□□□ -0.14
NKX3-1Q99801 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NKX3-1Q99801 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NKX3-1Q99801 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
NKX3-1Q99801 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC14.18□□□□□ -0.14
NKX3-1Q99801 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC14.18□□□□□ -0.14
NKX3-1Q99801 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC14.18□□□□□ -0.14
NKX3-1Q99801 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
NKX3-1Q99801 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
NKX3-1Q99801 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
NKX3-1Q99801 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
NKX3-1Q99801 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC14.18□□□□□ -0.14
NKX3-1Q99801 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC14.18□□□□□ -0.14
NKX3-1Q99801 FDX1P1-201ENST00000449115 551 ntBASIC14.18□□□□□ -0.14
NKX3-1Q99801 FAM197Y8-203ENST00000450145 560 ntBASIC14.18□□□□□ -0.14
NKX3-1Q99801 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC14.18□□□□□ -0.14
NKX3-1Q99801 POU5F1P6-201ENST00000466990 990 ntBASIC14.18□□□□□ -0.14
NKX3-1Q99801 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC14.18□□□□□ -0.14
NKX3-1Q99801 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
NKX3-1Q99801 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC14.18□□□□□ -0.14
NKX3-1Q99801 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC14.18□□□□□ -0.14
NKX3-1Q99801 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC14.18□□□□□ -0.14
NKX3-1Q99801 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC14.18□□□□□ -0.14
NKX3-1Q99801 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NKX3-1Q99801 WT1-AS_2.1-201ENST00000613208 137 ntBASIC14.18□□□□□ -0.14
NKX3-1Q99801 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
NKX3-1Q99801 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NKX3-1Q99801 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
NKX3-1Q99801 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NKX3-1Q99801 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC14.18□□□□□ -0.14
NKX3-1Q99801 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
NKX3-1Q99801 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
NKX3-1Q99801 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms