Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 LINC02228-204ENST00000642115 2962 ntBASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 AP005117.1-202ENST00000581724 1908 ntBASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 CRYGEP-201ENST00000412192 528 ntBASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 EMBP1-201ENST00000458200 901 ntBASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 UNC93B7-201ENST00000509439 705 ntBASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 AP002469.2-201ENST00000531724 424 ntBASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 AC012640.2-201ENST00000561606 901 ntBASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 AC096734.2-201ENST00000562054 433 ntBASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 AC007064.4-201ENST00000637740 555 ntBASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 AC105917.1-201ENST00000506637 2539 ntBASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC54Q8NEL0 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 AC092919.2-201ENST00000623631 1645 ntBASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 CENPM-204ENST00000402420 688 ntTSL 5 BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 CFL1-202ENST00000524553 860 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 QPRT-203ENST00000562473 579 ntTSL 3 BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 AC012313.10-201ENST00000623509 926 ntBASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 TSPY26P-202ENST00000565928 3884 ntBASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC54Q8NEL0 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC54Q8NEL0 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms