Protein–RNA interactions for Protein: Q8IVW4

CDKL3, Cyclin-dependent kinase-like 3, humanhuman

Predicted RBP Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL3Q8IVW4 AC091812.2-201ENST00000619081 385 ntBASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC16.64■□□□□ 0.25
CDKL3Q8IVW4 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 AC011477.6-201ENST00000604980 1927 ntBASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 AC026396.1-201ENST00000419388 421 ntBASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 AL138918.1-201ENST00000568306 659 ntBASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDKL3Q8IVW4 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 PRAL-201ENST00000624952 3286 ntBASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 GPX1P2-201ENST00000429271 606 ntBASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 AL671277.1-201ENST00000429656 993 ntBASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 FAM58CP-201ENST00000435741 640 ntBASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 AL135744.1-201ENST00000565098 629 ntBASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 COX5A-206ENST00000568783 571 ntTSL 3 BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 AC024267.1-201ENST00000582320 895 ntBASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDKL3Q8IVW4 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms