Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AP000344.2-201ENST00000512987 629 ntBASIC16.93■□□□□ 0.3
HDAC4P56524 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC16.93■□□□□ 0.3
HDAC4P56524 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.93■□□□□ 0.3
HDAC4P56524 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.93■□□□□ 0.3
HDAC4P56524 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
HDAC4P56524 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC4P56524 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.93■□□□□ 0.3
HDAC4P56524 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC4P56524 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC4P56524 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.93■□□□□ 0.3
HDAC4P56524 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC4P56524 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC4P56524 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC4P56524 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC16.93■□□□□ 0.3
HDAC4P56524 AC008677.1-201ENST00000519230 1561 ntBASIC16.93■□□□□ 0.3
HDAC4P56524 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.93■□□□□ 0.3
HDAC4P56524 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC16.93■□□□□ 0.3
HDAC4P56524 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC4P56524 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC4P56524 CDC14C-201ENST00000428251 1719 ntBASIC16.93■□□□□ 0.3
HDAC4P56524 AC069224.1-201ENST00000566372 1715 ntBASIC16.93■□□□□ 0.3
HDAC4P56524 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC4P56524 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.93■□□□□ 0.3
HDAC4P56524 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.93■□□□□ 0.3
HDAC4P56524 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC4P56524 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC4P56524 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC4P56524 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC4P56524 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC16.92■□□□□ 0.3
HDAC4P56524 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC4P56524 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC4P56524 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC4P56524 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC16.92■□□□□ 0.3
HDAC4P56524 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC4P56524 AL627223.1-201ENST00000416693 442 ntBASIC16.92■□□□□ 0.3
HDAC4P56524 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.92■□□□□ 0.3
HDAC4P56524 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC4P56524 AC245100.5-201ENST00000452108 331 ntBASIC16.92■□□□□ 0.3
HDAC4P56524 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC16.92■□□□□ 0.3
HDAC4P56524 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC16.92■□□□□ 0.3
HDAC4P56524 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC16.92■□□□□ 0.3
HDAC4P56524 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.92■□□□□ 0.3
HDAC4P56524 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC16.92■□□□□ 0.3
HDAC4P56524 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC16.92■□□□□ 0.3
HDAC4P56524 AC134684.3-201ENST00000641758 218 ntBASIC16.92■□□□□ 0.3
HDAC4P56524 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC4P56524 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
HDAC4P56524 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC4P56524 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC4P56524 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC4P56524 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.92■□□□□ 0.3
HDAC4P56524 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC4P56524 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC4P56524 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.92■□□□□ 0.3
HDAC4P56524 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
HDAC4P56524 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC4P56524 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
HDAC4P56524 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.92■□□□□ 0.3
HDAC4P56524 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC4P56524 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC4P56524 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
HDAC4P56524 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC4P56524 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HDAC4P56524 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
HDAC4P56524 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HDAC4P56524 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC16.91■□□□□ 0.3
HDAC4P56524 LINC02447-202ENST00000501888 2146 ntBASIC16.91■□□□□ 0.3
HDAC4P56524 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
HDAC4P56524 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDAC4P56524 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.91■□□□□ 0.3
HDAC4P56524 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.91■□□□□ 0.3
HDAC4P56524 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HDAC4P56524 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDAC4P56524 AC103702.1-201ENST00000548801 2630 ntBASIC16.91■□□□□ 0.3
HDAC4P56524 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HDAC4P56524 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
HDAC4P56524 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC16.91■□□□□ 0.3
HDAC4P56524 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HDAC4P56524 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDAC4P56524 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDAC4P56524 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDAC4P56524 AC005237.2-201ENST00000434368 219 ntBASIC16.91■□□□□ 0.3
HDAC4P56524 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.91■□□□□ 0.3
HDAC4P56524 AP006288.1-201ENST00000446065 395 ntBASIC16.91■□□□□ 0.3
HDAC4P56524 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HDAC4P56524 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
HDAC4P56524 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC16.91■□□□□ 0.3
HDAC4P56524 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
HDAC4P56524 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDAC4P56524 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
HDAC4P56524 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDAC4P56524 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
HDAC4P56524 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HDAC4P56524 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDAC4P56524 AC112504.1-201ENST00000623415 1841 ntBASIC16.91■□□□□ 0.3
HDAC4P56524 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC16.91■□□□□ 0.3
HDAC4P56524 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HDAC4P56524 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC16.91■□□□□ 0.3
HDAC4P56524 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDAC4P56524 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms