Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
FOXA3P55318 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA3P55318 GSN-206ENST00000394353 2311 ntTSL 2 BASIC12.22□□□□□ -0.45
FOXA3P55318 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC12.22□□□□□ -0.45
FOXA3P55318 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC12.22□□□□□ -0.45
FOXA3P55318 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
FOXA3P55318 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
FOXA3P55318 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA3P55318 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
FOXA3P55318 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
FOXA3P55318 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA3P55318 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC12.22□□□□□ -0.45
FOXA3P55318 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA3P55318 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC12.22□□□□□ -0.45
FOXA3P55318 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC12.22□□□□□ -0.45
FOXA3P55318 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC12.22□□□□□ -0.45
FOXA3P55318 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA3P55318 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA3P55318 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA3P55318 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC12.22□□□□□ -0.45
FOXA3P55318 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
FOXA3P55318 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA3P55318 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA3P55318 AL592424.1-201ENST00000563624 1536 ntBASIC12.21□□□□□ -0.45
FOXA3P55318 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA3P55318 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
FOXA3P55318 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA3P55318 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA3P55318 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA3P55318 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC12.21□□□□□ -0.45
FOXA3P55318 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC12.21□□□□□ -0.45
FOXA3P55318 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC12.21□□□□□ -0.45
FOXA3P55318 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC12.21□□□□□ -0.45
FOXA3P55318 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC12.21□□□□□ -0.45
FOXA3P55318 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA3P55318 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC12.21□□□□□ -0.45
FOXA3P55318 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC12.21□□□□□ -0.45
FOXA3P55318 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
FOXA3P55318 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC12.21□□□□□ -0.45
FOXA3P55318 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA3P55318 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA3P55318 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA3P55318 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC12.21□□□□□ -0.45
FOXA3P55318 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA3P55318 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA3P55318 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA3P55318 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA3P55318 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC12.21□□□□□ -0.45
FOXA3P55318 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA3P55318 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC12.21□□□□□ -0.45
FOXA3P55318 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC12.21□□□□□ -0.45
FOXA3P55318 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA3P55318 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA3P55318 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC12.21□□□□□ -0.45
FOXA3P55318 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA3P55318 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC12.21□□□□□ -0.45
FOXA3P55318 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC12.21□□□□□ -0.45
FOXA3P55318 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC12.21□□□□□ -0.45
FOXA3P55318 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC12.21□□□□□ -0.45
FOXA3P55318 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
FOXA3P55318 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
FOXA3P55318 AC124864.1-201ENST00000623408 392 ntBASIC12.21□□□□□ -0.45
FOXA3P55318 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA3P55318 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA3P55318 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA3P55318 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA3P55318 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
FOXA3P55318 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA3P55318 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA3P55318 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
FOXA3P55318 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
FOXA3P55318 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC12.21□□□□□ -0.46
FOXA3P55318 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC12.21□□□□□ -0.46
FOXA3P55318 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.46
FOXA3P55318 MECR-202ENST00000373791 2416 ntTSL 2 BASIC12.21□□□□□ -0.46
FOXA3P55318 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC12.21□□□□□ -0.46
FOXA3P55318 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
FOXA3P55318 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
FOXA3P55318 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.46
FOXA3P55318 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
FOXA3P55318 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.21□□□□□ -0.46
FOXA3P55318 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC12.21□□□□□ -0.46
FOXA3P55318 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC12.21□□□□□ -0.46
FOXA3P55318 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
FOXA3P55318 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC12.21□□□□□ -0.46
FOXA3P55318 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
FOXA3P55318 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
FOXA3P55318 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.46
FOXA3P55318 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC12.2□□□□□ -0.46
FOXA3P55318 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC12.2□□□□□ -0.46
FOXA3P55318 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC12.2□□□□□ -0.46
FOXA3P55318 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC12.2□□□□□ -0.46
FOXA3P55318 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
FOXA3P55318 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
FOXA3P55318 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms