Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC14.31□□□□□ -0.12
SOX2P48431 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC14.31□□□□□ -0.12
SOX2P48431 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 TNRC18P2-201ENST00000417666 2714 ntBASIC14.31□□□□□ -0.12
SOX2P48431 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC14.31□□□□□ -0.12
SOX2P48431 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC14.31□□□□□ -0.12
SOX2P48431 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC14.31□□□□□ -0.12
SOX2P48431 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 AC016027.1-202ENST00000607927 1699 ntBASIC14.31□□□□□ -0.12
SOX2P48431 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
SOX2P48431 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC14.31□□□□□ -0.12
SOX2P48431 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC14.31□□□□□ -0.12
SOX2P48431 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC14.31□□□□□ -0.12
SOX2P48431 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC14.31□□□□□ -0.12
SOX2P48431 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 SCARNA2-201ENST00000458748 420 ntBASIC14.31□□□□□ -0.12
SOX2P48431 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC14.31□□□□□ -0.12
SOX2P48431 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC14.31□□□□□ -0.12
SOX2P48431 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC14.31□□□□□ -0.12
SOX2P48431 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
SOX2P48431 RMI2-205ENST00000576027 818 ntTSL 2 BASIC14.31□□□□□ -0.12
SOX2P48431 CYGB-205ENST00000590175 830 ntTSL 3 BASIC14.31□□□□□ -0.12
SOX2P48431 AC006557.2-201ENST00000592985 1240 ntBASIC14.31□□□□□ -0.12
SOX2P48431 AC025062.2-201ENST00000605477 670 ntBASIC14.31□□□□□ -0.12
SOX2P48431 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
SOX2P48431 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 AC129492.6-201ENST00000611383 1305 ntBASIC14.31□□□□□ -0.12
SOX2P48431 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC14.31□□□□□ -0.12
SOX2P48431 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC14.31□□□□□ -0.12
SOX2P48431 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
SOX2P48431 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
SOX2P48431 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
SOX2P48431 AL136379.1-201ENST00000623471 2642 ntBASIC14.3□□□□□ -0.12
SOX2P48431 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
SOX2P48431 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SOX2P48431 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC14.3□□□□□ -0.12
SOX2P48431 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SOX2P48431 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
SOX2P48431 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SOX2P48431 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SOX2P48431 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SOX2P48431 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
SOX2P48431 ARMC10P1-201ENST00000313754 855 ntBASIC14.3□□□□□ -0.12
SOX2P48431 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC14.3□□□□□ -0.12
SOX2P48431 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SOX2P48431 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC14.3□□□□□ -0.12
SOX2P48431 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SOX2P48431 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC14.3□□□□□ -0.12
SOX2P48431 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
SOX2P48431 RAB17-203ENST00000409576 466 ntTSL 3 BASIC14.3□□□□□ -0.12
SOX2P48431 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC14.3□□□□□ -0.12
SOX2P48431 FAM210CP-201ENST00000445714 574 ntBASIC14.3□□□□□ -0.12
SOX2P48431 NMU-205ENST00000511469 756 ntTSL 3 BASIC14.3□□□□□ -0.12
SOX2P48431 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC14.3□□□□□ -0.12
SOX2P48431 AC021087.4-201ENST00000563761 564 ntBASIC14.3□□□□□ -0.12
SOX2P48431 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SOX2P48431 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC14.3□□□□□ -0.12
SOX2P48431 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
SOX2P48431 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SOX2P48431 GGTLC5P-201ENST00000617623 998 ntBASIC14.3□□□□□ -0.12
SOX2P48431 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.3□□□□□ -0.12
SOX2P48431 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SOX2P48431 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SOX2P48431 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SOX2P48431 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SOX2P48431 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SOX2P48431 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC14.3□□□□□ -0.12
SOX2P48431 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SOX2P48431 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SOX2P48431 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC14.3□□□□□ -0.12
SOX2P48431 CYP51A1P2-201ENST00000419457 1499 ntBASIC14.3□□□□□ -0.12
SOX2P48431 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC14.3□□□□□ -0.12
SOX2P48431 AC136621.1-201ENST00000624017 2304 ntBASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms