Protein–RNA interactions for Protein: P37840

SNCA, Alpha-synuclein, humanhuman

Predictions only

Length 140 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNCAP37840 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SNCAP37840 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
SNCAP37840 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SNCAP37840 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC13.4□□□□□ -0.26
SNCAP37840 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
SNCAP37840 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SNCAP37840 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
SNCAP37840 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC13.4□□□□□ -0.26
SNCAP37840 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
SNCAP37840 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
SNCAP37840 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC13.4□□□□□ -0.26
SNCAP37840 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
SNCAP37840 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC13.4□□□□□ -0.27
SNCAP37840 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SNCAP37840 AL590787.1-201ENST00000568856 1315 ntBASIC13.39□□□□□ -0.27
SNCAP37840 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SNCAP37840 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SNCAP37840 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC13.39□□□□□ -0.27
SNCAP37840 AP005117.1-201ENST00000584346 1413 ntBASIC13.39□□□□□ -0.27
SNCAP37840 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
SNCAP37840 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC13.39□□□□□ -0.27
SNCAP37840 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SNCAP37840 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SNCAP37840 GSN-203ENST00000373808 2664 ntTSL 2 BASIC13.39□□□□□ -0.27
SNCAP37840 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
SNCAP37840 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SNCAP37840 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC13.39□□□□□ -0.27
SNCAP37840 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SNCAP37840 GGT4P-201ENST00000623672 1708 ntBASIC13.39□□□□□ -0.27
SNCAP37840 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC13.39□□□□□ -0.27
SNCAP37840 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC13.39□□□□□ -0.27
SNCAP37840 ACE-203ENST00000413513 2237 ntTSL 2 BASIC13.39□□□□□ -0.27
SNCAP37840 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC13.39□□□□□ -0.27
SNCAP37840 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SNCAP37840 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SNCAP37840 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SNCAP37840 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
SNCAP37840 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SNCAP37840 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SNCAP37840 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SNCAP37840 MED16-201ENST00000269814 1199 ntTSL 5 BASIC13.39□□□□□ -0.27
SNCAP37840 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
SNCAP37840 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC13.39□□□□□ -0.27
SNCAP37840 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SNCAP37840 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SNCAP37840 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SNCAP37840 BET1L-206ENST00000486280 665 ntTSL 3 BASIC13.39□□□□□ -0.27
SNCAP37840 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SNCAP37840 PNN-202ENST00000553331 656 ntTSL 3 BASIC13.39□□□□□ -0.27
SNCAP37840 DUX4L17-201ENST00000557360 1267 ntBASIC13.39□□□□□ -0.27
SNCAP37840 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
SNCAP37840 ARL16-209ENST00000573715 763 ntTSL 3 BASIC13.39□□□□□ -0.27
SNCAP37840 ARL16-211ENST00000576135 694 ntTSL 3 BASIC13.39□□□□□ -0.27
SNCAP37840 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC13.39□□□□□ -0.27
SNCAP37840 AL353135.1-201ENST00000606729 504 ntBASIC13.39□□□□□ -0.27
SNCAP37840 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SNCAP37840 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC13.39□□□□□ -0.27
SNCAP37840 AL022326.1-202ENST00000641533 845 ntBASIC13.39□□□□□ -0.27
SNCAP37840 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SNCAP37840 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SNCAP37840 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC13.39□□□□□ -0.27
SNCAP37840 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SNCAP37840 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC13.39□□□□□ -0.27
SNCAP37840 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
SNCAP37840 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SNCAP37840 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SNCAP37840 AC006449.6-201ENST00000612330 2296 ntBASIC13.39□□□□□ -0.27
SNCAP37840 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SNCAP37840 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC13.39□□□□□ -0.27
SNCAP37840 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SNCAP37840 PRAL-201ENST00000624952 3286 ntBASIC13.39□□□□□ -0.27
SNCAP37840 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
SNCAP37840 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
SNCAP37840 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SNCAP37840 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
SNCAP37840 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
SNCAP37840 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC13.39□□□□□ -0.27
SNCAP37840 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SNCAP37840 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC13.39□□□□□ -0.27
SNCAP37840 KCP-203ENST00000610776 5108 ntTSL 5 BASIC13.38□□□□□ -0.27
SNCAP37840 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
SNCAP37840 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC13.38□□□□□ -0.27
SNCAP37840 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC13.38□□□□□ -0.27
SNCAP37840 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SNCAP37840 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SNCAP37840 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SNCAP37840 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SNCAP37840 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC13.38□□□□□ -0.27
SNCAP37840 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC13.38□□□□□ -0.27
SNCAP37840 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SNCAP37840 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SNCAP37840 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
SNCAP37840 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SNCAP37840 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC13.38□□□□□ -0.27
SNCAP37840 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC13.38□□□□□ -0.27
SNCAP37840 AC002310.6-201ENST00000624451 1377 ntBASIC13.38□□□□□ -0.27
SNCAP37840 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SNCAP37840 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SNCAP37840 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SNCAP37840 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms