Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL5A1P20908 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.26■□□□□ 0.03
COL5A1P20908 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL5A1P20908 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL5A1P20908 AC092171.3-201ENST00000610122 2651 ntBASIC15.25■□□□□ 0.03
COL5A1P20908 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL5A1P20908 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL5A1P20908 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL5A1P20908 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC15.25■□□□□ 0.03
COL5A1P20908 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
COL5A1P20908 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC15.25■□□□□ 0.03
COL5A1P20908 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL5A1P20908 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.25■□□□□ 0.03
COL5A1P20908 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC15.25■□□□□ 0.03
COL5A1P20908 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC15.25■□□□□ 0.03
COL5A1P20908 PHKG1P2-201ENST00000457537 863 ntBASIC15.25■□□□□ 0.03
COL5A1P20908 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC15.25■□□□□ 0.03
COL5A1P20908 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC15.25■□□□□ 0.03
COL5A1P20908 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC15.25■□□□□ 0.03
COL5A1P20908 LARP4-220ENST00000615080 856 ntTSL 5 BASIC15.25■□□□□ 0.03
COL5A1P20908 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC15.25■□□□□ 0.03
COL5A1P20908 AL121723.1-201ENST00000445194 1519 ntBASIC15.25■□□□□ 0.03
COL5A1P20908 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
COL5A1P20908 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL5A1P20908 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL5A1P20908 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL5A1P20908 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL5A1P20908 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC15.25■□□□□ 0.03
COL5A1P20908 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC15.25■□□□□ 0.03
COL5A1P20908 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL5A1P20908 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL5A1P20908 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
COL5A1P20908 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL5A1P20908 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
COL5A1P20908 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC15.25■□□□□ 0.03
COL5A1P20908 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
COL5A1P20908 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL5A1P20908 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL5A1P20908 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL5A1P20908 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC15.24■□□□□ 0.03
COL5A1P20908 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC15.24■□□□□ 0.03
COL5A1P20908 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL5A1P20908 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL5A1P20908 GUK1-206ENST00000366723 845 ntTSL 5 BASIC15.24■□□□□ 0.03
COL5A1P20908 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL5A1P20908 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
COL5A1P20908 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL5A1P20908 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL5A1P20908 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC15.24■□□□□ 0.03
COL5A1P20908 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.24■□□□□ 0.03
COL5A1P20908 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC15.24■□□□□ 0.03
COL5A1P20908 AC093813.1-201ENST00000605066 256 ntBASIC15.24■□□□□ 0.03
COL5A1P20908 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
COL5A1P20908 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC15.24■□□□□ 0.03
COL5A1P20908 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC15.24■□□□□ 0.03
COL5A1P20908 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL5A1P20908 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL5A1P20908 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
COL5A1P20908 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC15.24■□□□□ 0.03
COL5A1P20908 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
COL5A1P20908 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL5A1P20908 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL5A1P20908 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL5A1P20908 REXO1L8P-201ENST00000604378 1897 ntBASIC15.24■□□□□ 0.03
COL5A1P20908 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC15.24■□□□□ 0.03
COL5A1P20908 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
COL5A1P20908 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC15.24■□□□□ 0.03
COL5A1P20908 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC15.24■□□□□ 0.03
COL5A1P20908 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC15.24■□□□□ 0.03
COL5A1P20908 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL5A1P20908 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC15.24■□□□□ 0.03
COL5A1P20908 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC15.24■□□□□ 0.03
COL5A1P20908 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC15.24■□□□□ 0.03
COL5A1P20908 IFT20-206ENST00000578122 834 ntTSL 2 BASIC15.24■□□□□ 0.03
COL5A1P20908 IFT20-208ENST00000578985 831 ntTSL 3 BASIC15.24■□□□□ 0.03
COL5A1P20908 AL450472.2-201ENST00000603663 1156 ntBASIC15.24■□□□□ 0.03
COL5A1P20908 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL5A1P20908 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL5A1P20908 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL5A1P20908 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL5A1P20908 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL5A1P20908 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL5A1P20908 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL5A1P20908 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15.24■□□□□ 0.03
COL5A1P20908 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC15.24■□□□□ 0.03
COL5A1P20908 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL5A1P20908 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
COL5A1P20908 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL5A1P20908 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL5A1P20908 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
COL5A1P20908 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC15.23■□□□□ 0.03
COL5A1P20908 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL5A1P20908 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL5A1P20908 CYP2AB1P-202ENST00000454440 1456 ntBASIC15.23■□□□□ 0.03
COL5A1P20908 AGER-203ENST00000375065 665 ntTSL 2 BASIC15.23■□□□□ 0.03
COL5A1P20908 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
COL5A1P20908 AL133267.1-201ENST00000398220 340 ntBASIC15.23■□□□□ 0.03
COL5A1P20908 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL5A1P20908 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC15.23■□□□□ 0.03
COL5A1P20908 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms