Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CXCL1P09341 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CXCL1P09341 AL928921.2-201ENST00000641325 2442 ntBASIC12.61□□□□□ -0.39
CXCL1P09341 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CXCL1P09341 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC12.61□□□□□ -0.39
CXCL1P09341 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC12.61□□□□□ -0.39
CXCL1P09341 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CXCL1P09341 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC12.61□□□□□ -0.39
CXCL1P09341 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
CXCL1P09341 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC12.61□□□□□ -0.39
CXCL1P09341 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC12.61□□□□□ -0.39
CXCL1P09341 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CXCL1P09341 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CXCL1P09341 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
CXCL1P09341 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC12.61□□□□□ -0.39
CXCL1P09341 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CXCL1P09341 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CXCL1P09341 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CXCL1P09341 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC12.6□□□□□ -0.39
CXCL1P09341 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CXCL1P09341 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
CXCL1P09341 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
CXCL1P09341 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CXCL1P09341 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CXCL1P09341 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC12.6□□□□□ -0.39
CXCL1P09341 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CXCL1P09341 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC12.6□□□□□ -0.39
CXCL1P09341 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
CXCL1P09341 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
CXCL1P09341 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
CXCL1P09341 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC12.6□□□□□ -0.39
CXCL1P09341 AL353593.2-201ENST00000602529 1483 ntBASIC12.6□□□□□ -0.39
CXCL1P09341 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC12.6□□□□□ -0.39
CXCL1P09341 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
CXCL1P09341 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CXCL1P09341 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CXCL1P09341 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CXCL1P09341 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC12.6□□□□□ -0.39
CXCL1P09341 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CXCL1P09341 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CXCL1P09341 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CXCL1P09341 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC12.6□□□□□ -0.39
CXCL1P09341 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC12.6□□□□□ -0.39
CXCL1P09341 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CXCL1P09341 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC12.6□□□□□ -0.39
CXCL1P09341 TMA16-209ENST00000513272 803 ntTSL 2 BASIC12.6□□□□□ -0.39
CXCL1P09341 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CXCL1P09341 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CXCL1P09341 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC12.6□□□□□ -0.39
CXCL1P09341 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC12.6□□□□□ -0.39
CXCL1P09341 AP006294.2-201ENST00000641667 209 ntBASIC12.6□□□□□ -0.39
CXCL1P09341 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CXCL1P09341 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CXCL1P09341 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC12.6□□□□□ -0.39
CXCL1P09341 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CXCL1P09341 AC148477.4-201ENST00000613430 1793 ntBASIC12.6□□□□□ -0.39
CXCL1P09341 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC12.6□□□□□ -0.39
CXCL1P09341 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CXCL1P09341 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CXCL1P09341 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CXCL1P09341 AL135999.2-201ENST00000622438 1686 ntBASIC12.6□□□□□ -0.39
CXCL1P09341 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC12.6□□□□□ -0.39
CXCL1P09341 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
CXCL1P09341 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
CXCL1P09341 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC12.6□□□□□ -0.39
CXCL1P09341 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC12.6□□□□□ -0.39
CXCL1P09341 PCDHA3-202ENST00000532566 4594 ntBASIC12.6□□□□□ -0.39
CXCL1P09341 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC12.6□□□□□ -0.39
CXCL1P09341 AC140479.7-201ENST00000636301 2332 ntBASIC12.6□□□□□ -0.39
CXCL1P09341 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC12.6□□□□□ -0.39
CXCL1P09341 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
CXCL1P09341 AC009336.1-201ENST00000608941 1553 ntBASIC12.6□□□□□ -0.39
CXCL1P09341 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
CXCL1P09341 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CXCL1P09341 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
CXCL1P09341 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CXCL1P09341 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CXCL1P09341 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CXCL1P09341 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC12.59□□□□□ -0.39
CXCL1P09341 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CXCL1P09341 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CXCL1P09341 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CXCL1P09341 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CXCL1P09341 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
CXCL1P09341 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC12.59□□□□□ -0.39
CXCL1P09341 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CXCL1P09341 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CXCL1P09341 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CXCL1P09341 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CXCL1P09341 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC12.59□□□□□ -0.39
CXCL1P09341 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CXCL1P09341 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
CXCL1P09341 AC003669.1-201ENST00000334569 611 ntBASIC12.59□□□□□ -0.39
CXCL1P09341 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CXCL1P09341 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CXCL1P09341 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC12.59□□□□□ -0.39
CXCL1P09341 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC12.59□□□□□ -0.39
CXCL1P09341 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC12.59□□□□□ -0.39
CXCL1P09341 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CXCL1P09341 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms