Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.97■□□□□ 0.31
RB1P06400 GGT3P-204ENST00000453783 1664 ntBASIC16.97■□□□□ 0.31
RB1P06400 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RB1P06400 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RB1P06400 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
RB1P06400 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
RB1P06400 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RB1P06400 AC134312.5-201ENST00000568031 1313 ntBASIC16.96■□□□□ 0.31
RB1P06400 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.96■□□□□ 0.31
RB1P06400 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
RB1P06400 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.96■□□□□ 0.31
RB1P06400 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RB1P06400 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC16.96■□□□□ 0.31
RB1P06400 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
RB1P06400 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RB1P06400 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RB1P06400 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RB1P06400 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RB1P06400 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RB1P06400 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RB1P06400 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RB1P06400 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC16.96■□□□□ 0.31
RB1P06400 MIR1247-201ENST00000408206 136 ntBASIC16.96■□□□□ 0.31
RB1P06400 GPAA1P2-201ENST00000417923 928 ntBASIC16.96■□□□□ 0.31
RB1P06400 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.96■□□□□ 0.31
RB1P06400 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC16.96■□□□□ 0.31
RB1P06400 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
RB1P06400 PARP8-218ENST00000513738 596 ntTSL 4 BASIC16.96■□□□□ 0.31
RB1P06400 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC16.96■□□□□ 0.31
RB1P06400 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.96■□□□□ 0.31
RB1P06400 CLUHP6-201ENST00000580789 941 ntBASIC16.96■□□□□ 0.31
RB1P06400 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
RB1P06400 RHOXF1P1-202ENST00000635473 501 ntBASIC16.96■□□□□ 0.31
RB1P06400 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
RB1P06400 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
RB1P06400 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
RB1P06400 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RB1P06400 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RB1P06400 AC020916.1-201ENST00000587762 1774 ntBASIC16.96■□□□□ 0.31
RB1P06400 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
RB1P06400 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
RB1P06400 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.96■□□□□ 0.31
RB1P06400 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RB1P06400 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
RB1P06400 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
RB1P06400 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RB1P06400 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
RB1P06400 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
RB1P06400 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
RB1P06400 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
RB1P06400 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC16.96■□□□□ 0.3
RB1P06400 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
RB1P06400 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
RB1P06400 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.95■□□□□ 0.3
RB1P06400 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.95■□□□□ 0.3
RB1P06400 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RB1P06400 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RB1P06400 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.95■□□□□ 0.3
RB1P06400 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC16.95■□□□□ 0.3
RB1P06400 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RB1P06400 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC16.95■□□□□ 0.3
RB1P06400 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
RB1P06400 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC16.95■□□□□ 0.3
RB1P06400 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
RB1P06400 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC16.95■□□□□ 0.3
RB1P06400 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
RB1P06400 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC16.95■□□□□ 0.3
RB1P06400 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
RB1P06400 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16.95■□□□□ 0.3
RB1P06400 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
RB1P06400 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC16.95■□□□□ 0.3
RB1P06400 MIR3615-201ENST00000581999 87 ntBASIC16.95■□□□□ 0.3
RB1P06400 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
RB1P06400 AL049840.4-201ENST00000602422 811 ntBASIC16.95■□□□□ 0.3
RB1P06400 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
RB1P06400 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.95■□□□□ 0.3
RB1P06400 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
RB1P06400 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.95■□□□□ 0.3
RB1P06400 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC16.95■□□□□ 0.3
RB1P06400 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
RB1P06400 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
RB1P06400 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.94■□□□□ 0.3
RB1P06400 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
RB1P06400 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RB1P06400 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.94■□□□□ 0.3
RB1P06400 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RB1P06400 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
RB1P06400 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC16.94■□□□□ 0.3
RB1P06400 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
RB1P06400 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RB1P06400 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RB1P06400 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC16.94■□□□□ 0.3
RB1P06400 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC16.94■□□□□ 0.3
RB1P06400 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RB1P06400 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC16.94■□□□□ 0.3
RB1P06400 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC16.94■□□□□ 0.3
RB1P06400 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RB1P06400 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC16.94■□□□□ 0.3
RB1P06400 GOLGA2P4-201ENST00000441462 777 ntBASIC16.94■□□□□ 0.3
RB1P06400 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms