Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
HLA-DQA1P01909 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC12.24□□□□□ -0.45
HLA-DQA1P01909 AC092647.4-201ENST00000457211 535 ntBASIC12.24□□□□□ -0.45
HLA-DQA1P01909 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC12.24□□□□□ -0.45
HLA-DQA1P01909 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC12.24□□□□□ -0.45
HLA-DQA1P01909 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC12.24□□□□□ -0.45
HLA-DQA1P01909 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC12.24□□□□□ -0.45
HLA-DQA1P01909 PPOX-219ENST00000544598 813 ntTSL 2 BASIC12.24□□□□□ -0.45
HLA-DQA1P01909 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DQA1P01909 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC12.24□□□□□ -0.45
HLA-DQA1P01909 TK2-213ENST00000563369 882 ntTSL 5 BASIC12.24□□□□□ -0.45
HLA-DQA1P01909 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC12.24□□□□□ -0.45
HLA-DQA1P01909 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC12.24□□□□□ -0.45
HLA-DQA1P01909 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC12.24□□□□□ -0.45
HLA-DQA1P01909 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
HLA-DQA1P01909 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC12.24□□□□□ -0.45
HLA-DQA1P01909 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC12.24□□□□□ -0.45
HLA-DQA1P01909 PGM5P2-202ENST00000637225 1043 ntBASIC12.24□□□□□ -0.45
HLA-DQA1P01909 AC097493.4-201ENST00000641197 219 ntBASIC12.24□□□□□ -0.45
HLA-DQA1P01909 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DQA1P01909 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
HLA-DQA1P01909 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DQA1P01909 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC12.24□□□□□ -0.45
HLA-DQA1P01909 PTENP1-202ENST00000532280 3996 ntBASIC12.24□□□□□ -0.45
HLA-DQA1P01909 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
HLA-DQA1P01909 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DQA1P01909 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC12.24□□□□□ -0.45
HLA-DQA1P01909 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 AL512652.2-201ENST00000625156 1716 ntBASIC12.23□□□□□ -0.45
HLA-DQA1P01909 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 TET3-201ENST00000305799 5174 ntTSL 5 BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 AC007967.3-201ENST00000434308 558 ntBASIC12.23□□□□□ -0.45
HLA-DQA1P01909 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 HADH-212ENST00000638621 741 ntTSL 5 BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 AC005840.4-201ENST00000541242 2494 ntBASIC12.23□□□□□ -0.45
HLA-DQA1P01909 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC12.23□□□□□ -0.45
HLA-DQA1P01909 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DQA1P01909 KRT8P10-201ENST00000450021 1447 ntBASIC12.22□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms