Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
MSH4O15457 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
MSH4O15457 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
MSH4O15457 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
MSH4O15457 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
MSH4O15457 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
MSH4O15457 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
MSH4O15457 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
MSH4O15457 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
MSH4O15457 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC18.08■□□□□ 0.48
MSH4O15457 HNRNPA1P40-201ENST00000426371 1278 ntBASIC18.08■□□□□ 0.48
MSH4O15457 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC18.08■□□□□ 0.48
MSH4O15457 ELP6-209ENST00000446787 894 ntTSL 3 BASIC18.08■□□□□ 0.48
MSH4O15457 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
MSH4O15457 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC18.08■□□□□ 0.48
MSH4O15457 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC18.08■□□□□ 0.48
MSH4O15457 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC18.08■□□□□ 0.48
MSH4O15457 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
MSH4O15457 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC18.08■□□□□ 0.48
MSH4O15457 SUOX-214ENST00000551841 906 ntTSL 3 BASIC18.08■□□□□ 0.48
MSH4O15457 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC18.08■□□□□ 0.48
MSH4O15457 SSH2-210ENST00000582084 560 ntTSL 3 BASIC18.08■□□□□ 0.48
MSH4O15457 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC18.08■□□□□ 0.48
MSH4O15457 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC18.08■□□□□ 0.48
MSH4O15457 AC008738.7-201ENST00000609744 511 ntBASIC18.08■□□□□ 0.48
MSH4O15457 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC18.08■□□□□ 0.48
MSH4O15457 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC18.08■□□□□ 0.48
MSH4O15457 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
MSH4O15457 BANP-204ENST00000393208 2283 ntTSL 2 BASIC18.08■□□□□ 0.48
MSH4O15457 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
MSH4O15457 CDC14C-201ENST00000428251 1719 ntBASIC18.08■□□□□ 0.48
MSH4O15457 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
MSH4O15457 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
MSH4O15457 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
MSH4O15457 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
MSH4O15457 AL603832.2-201ENST00000566195 2125 ntBASIC18.08■□□□□ 0.48
MSH4O15457 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
MSH4O15457 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC18.08■□□□□ 0.48
MSH4O15457 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
MSH4O15457 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC18.08■□□□□ 0.48
MSH4O15457 LINC02199-201ENST00000506655 2702 ntBASIC18.07■□□□□ 0.48
MSH4O15457 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
MSH4O15457 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
MSH4O15457 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
MSH4O15457 AC024909.3-201ENST00000611513 2257 ntBASIC18.07■□□□□ 0.48
MSH4O15457 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC18.07■□□□□ 0.48
MSH4O15457 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
MSH4O15457 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC18.07■□□□□ 0.48
MSH4O15457 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
MSH4O15457 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
MSH4O15457 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC18.07■□□□□ 0.48
MSH4O15457 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
MSH4O15457 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
MSH4O15457 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
MSH4O15457 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
MSH4O15457 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC18.07■□□□□ 0.48
MSH4O15457 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC18.07■□□□□ 0.48
MSH4O15457 FAM8A3P-201ENST00000427218 844 ntBASIC18.07■□□□□ 0.48
MSH4O15457 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
MSH4O15457 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC18.07■□□□□ 0.48
MSH4O15457 ZNF890P-202ENST00000530367 1156 ntBASIC18.07■□□□□ 0.48
MSH4O15457 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC18.07■□□□□ 0.48
MSH4O15457 AC044860.1-202ENST00000559481 777 ntBASIC18.07■□□□□ 0.48
MSH4O15457 SPIB-207ENST00000597855 564 ntTSL 4 BASIC18.07■□□□□ 0.48
MSH4O15457 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
MSH4O15457 MIR6069-201ENST00000620069 79 ntBASIC18.07■□□□□ 0.48
MSH4O15457 REXO1L1P-202ENST00000608646 1974 ntBASIC18.07■□□□□ 0.48
MSH4O15457 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
MSH4O15457 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC18.07■□□□□ 0.48
MSH4O15457 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC18.07■□□□□ 0.48
MSH4O15457 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
MSH4O15457 LINC02447-202ENST00000501888 2146 ntBASIC18.07■□□□□ 0.48
MSH4O15457 AL391005.1-201ENST00000623953 2435 ntBASIC18.07■□□□□ 0.48
MSH4O15457 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
MSH4O15457 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
MSH4O15457 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC18.06■□□□□ 0.48
MSH4O15457 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
MSH4O15457 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC18.06■□□□□ 0.48
MSH4O15457 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
MSH4O15457 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
MSH4O15457 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
MSH4O15457 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
MSH4O15457 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
MSH4O15457 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
MSH4O15457 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
MSH4O15457 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC18.06■□□□□ 0.48
MSH4O15457 TSPY16P-201ENST00000449843 468 ntBASIC18.06■□□□□ 0.48
MSH4O15457 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC18.06■□□□□ 0.48
MSH4O15457 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC18.06■□□□□ 0.48
MSH4O15457 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC18.06■□□□□ 0.48
MSH4O15457 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC18.06■□□□□ 0.48
MSH4O15457 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
MSH4O15457 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC18.06■□□□□ 0.48
MSH4O15457 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
MSH4O15457 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC18.06■□□□□ 0.48
MSH4O15457 AC004840.1-201ENST00000636359 365 ntBASIC18.06■□□□□ 0.48
MSH4O15457 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
MSH4O15457 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC18.06■□□□□ 0.48
MSH4O15457 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC18.06■□□□□ 0.48
MSH4O15457 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms