Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 AC129492.6-201ENST00000611383 1305 ntBASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 POLL-206ENST00000370172 2308 ntTSL 2 BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 LINC00265-3P-201ENST00000447588 903 ntBASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 AC106795.1-205ENST00000512851 1056 ntBASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 AP002414.4-201ENST00000589764 1148 ntBASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TCRBV3S1A0A5B6 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 ZEB1-AS1-208ENST00000607166 2503 ntBASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 AC104581.4-201ENST00000623126 3052 ntBASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
TCRBV3S1A0A5B6 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.15■□□□□ 0.02
TCRBV3S1A0A5B6 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC15.15■□□□□ 0.02
TCRBV3S1A0A5B6 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms