Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHA3Q9Y5H8 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHA3Q9Y5H8 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
PCDHA3Q9Y5H8 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC16.92■□□□□ 0.3
PCDHA3Q9Y5H8 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHA3Q9Y5H8 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
PCDHA3Q9Y5H8 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHA3Q9Y5H8 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHA3Q9Y5H8 CRCP-205ENST00000431089 942 ntTSL 2 BASIC16.92■□□□□ 0.3
PCDHA3Q9Y5H8 PRYP6-201ENST00000514804 343 ntBASIC16.92■□□□□ 0.3
PCDHA3Q9Y5H8 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC16.92■□□□□ 0.3
PCDHA3Q9Y5H8 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.92■□□□□ 0.3
PCDHA3Q9Y5H8 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHA3Q9Y5H8 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHA3Q9Y5H8 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHA3Q9Y5H8 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHA3Q9Y5H8 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC16.92■□□□□ 0.3
PCDHA3Q9Y5H8 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHA3Q9Y5H8 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHA3Q9Y5H8 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.92■□□□□ 0.3
PCDHA3Q9Y5H8 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHA3Q9Y5H8 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHA3Q9Y5H8 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
PCDHA3Q9Y5H8 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC16.92■□□□□ 0.3
PCDHA3Q9Y5H8 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.92■□□□□ 0.3
PCDHA3Q9Y5H8 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
PCDHA3Q9Y5H8 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHA3Q9Y5H8 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 CICP13-201ENST00000422015 2789 ntBASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 TMBIM7P-203ENST00000641617 1718 ntBASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 KRT18P2-201ENST00000447938 1258 ntBASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 EHF-205ENST00000527935 557 ntTSL 2 BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 AC034105.1-201ENST00000563488 319 ntBASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 AC018845.2-201ENST00000568326 409 ntBASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 AC064836.3-201ENST00000607928 673 ntBASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 AL161645.1-201ENST00000622716 1255 ntBASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PCDHA3Q9Y5H8 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDHA3Q9Y5H8 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC16.9■□□□□ 0.3
PCDHA3Q9Y5H8 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.9■□□□□ 0.3
PCDHA3Q9Y5H8 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDHA3Q9Y5H8 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC16.9■□□□□ 0.3
PCDHA3Q9Y5H8 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDHA3Q9Y5H8 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDHA3Q9Y5H8 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.9■□□□□ 0.3
PCDHA3Q9Y5H8 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDHA3Q9Y5H8 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
PCDHA3Q9Y5H8 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.9■□□□□ 0.3
PCDHA3Q9Y5H8 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC16.9■□□□□ 0.3
PCDHA3Q9Y5H8 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC16.9■□□□□ 0.3
PCDHA3Q9Y5H8 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC16.9■□□□□ 0.3
PCDHA3Q9Y5H8 KRT126P-201ENST00000549467 1181 ntBASIC16.9■□□□□ 0.3
PCDHA3Q9Y5H8 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC16.9■□□□□ 0.3
PCDHA3Q9Y5H8 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC16.9■□□□□ 0.3
PCDHA3Q9Y5H8 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PCDHA3Q9Y5H8 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
PCDHA3Q9Y5H8 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.9■□□□□ 0.3
PCDHA3Q9Y5H8 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDHA3Q9Y5H8 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC16.9■□□□□ 0.3
PCDHA3Q9Y5H8 AC006058.4-201ENST00000624016 1670 ntBASIC16.9■□□□□ 0.3
PCDHA3Q9Y5H8 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms