Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 AC011498.5-201ENST00000592027 486 ntBASIC15.76■□□□□ 0.11
NDE1Q9NXR1 AC083849.1-201ENST00000615227 514 ntBASIC15.76■□□□□ 0.11
NDE1Q9NXR1 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC15.76■□□□□ 0.11
NDE1Q9NXR1 AP001350.2-201ENST00000625104 1094 ntBASIC15.76■□□□□ 0.11
NDE1Q9NXR1 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
NDE1Q9NXR1 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
NDE1Q9NXR1 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC15.76■□□□□ 0.11
NDE1Q9NXR1 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NDE1Q9NXR1 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC15.76■□□□□ 0.11
NDE1Q9NXR1 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NDE1Q9NXR1 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
NDE1Q9NXR1 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC15.76■□□□□ 0.11
NDE1Q9NXR1 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC15.76■□□□□ 0.11
NDE1Q9NXR1 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NDE1Q9NXR1 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
NDE1Q9NXR1 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC15.76■□□□□ 0.11
NDE1Q9NXR1 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
NDE1Q9NXR1 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
NDE1Q9NXR1 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC15.76■□□□□ 0.11
NDE1Q9NXR1 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
NDE1Q9NXR1 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NDE1Q9NXR1 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NDE1Q9NXR1 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 TLE1-202ENST00000376484 666 ntTSL 3 BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 AC087481.3-201ENST00000602886 1894 ntBASIC15.75■□□□□ 0.11
NDE1Q9NXR1 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
NDE1Q9NXR1 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 RER1-203ENST00000378513 3000 ntTSL 3 BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 AP003680.1-201ENST00000598970 3660 ntBASIC15.74■□□□□ 0.11
NDE1Q9NXR1 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 LINC01238-205ENST00000567549 1107 ntBASIC15.74■□□□□ 0.11
NDE1Q9NXR1 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 CYP2A7P1-201ENST00000595391 815 ntBASIC15.74■□□□□ 0.11
NDE1Q9NXR1 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 CICP23-201ENST00000605013 2741 ntBASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms