Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17.33■□□□□ 0.36
SIX2Q9NPC8 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC17.33■□□□□ 0.36
SIX2Q9NPC8 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.33■□□□□ 0.36
SIX2Q9NPC8 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC17.33■□□□□ 0.36
SIX2Q9NPC8 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC17.33■□□□□ 0.36
SIX2Q9NPC8 AC022145.2-201ENST00000598203 171 ntBASIC17.33■□□□□ 0.36
SIX2Q9NPC8 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC17.33■□□□□ 0.36
SIX2Q9NPC8 AC105339.1-204ENST00000636249 355 ntBASIC17.33■□□□□ 0.36
SIX2Q9NPC8 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
SIX2Q9NPC8 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SIX2Q9NPC8 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC17.33■□□□□ 0.36
SIX2Q9NPC8 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC17.33■□□□□ 0.36
SIX2Q9NPC8 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SIX2Q9NPC8 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SIX2Q9NPC8 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC17.33■□□□□ 0.36
SIX2Q9NPC8 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SIX2Q9NPC8 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
SIX2Q9NPC8 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
SIX2Q9NPC8 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
SIX2Q9NPC8 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC17.33■□□□□ 0.36
SIX2Q9NPC8 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
SIX2Q9NPC8 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
SIX2Q9NPC8 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 LOX-206ENST00000639739 1626 ntTSL 5 BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 AP3S2-216ENST00000617003 1561 ntBASIC17.32■□□□□ 0.36
SIX2Q9NPC8 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 HLA-H-201ENST00000383620 1096 ntBASIC17.32■□□□□ 0.36
SIX2Q9NPC8 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 AL592309.1-201ENST00000443127 649 ntBASIC17.32■□□□□ 0.36
SIX2Q9NPC8 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 AC243562.2-201ENST00000561247 970 ntBASIC17.32■□□□□ 0.36
SIX2Q9NPC8 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 AC136621.1-201ENST00000624017 2304 ntBASIC17.32■□□□□ 0.36
SIX2Q9NPC8 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 SSR4P1-203ENST00000599569 2260 ntBASIC17.32■□□□□ 0.36
SIX2Q9NPC8 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SIX2Q9NPC8 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SIX2Q9NPC8 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SIX2Q9NPC8 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SIX2Q9NPC8 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC17.31■□□□□ 0.36
SIX2Q9NPC8 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC17.31■□□□□ 0.36
SIX2Q9NPC8 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SIX2Q9NPC8 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SIX2Q9NPC8 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SIX2Q9NPC8 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SIX2Q9NPC8 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SIX2Q9NPC8 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SIX2Q9NPC8 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC17.31■□□□□ 0.36
SIX2Q9NPC8 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC17.31■□□□□ 0.36
SIX2Q9NPC8 YBX1P5-201ENST00000509441 847 ntBASIC17.31■□□□□ 0.36
SIX2Q9NPC8 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC17.31■□□□□ 0.36
SIX2Q9NPC8 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC17.31■□□□□ 0.36
SIX2Q9NPC8 AC093520.2-201ENST00000561830 333 ntBASIC17.31■□□□□ 0.36
SIX2Q9NPC8 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC17.31■□□□□ 0.36
SIX2Q9NPC8 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.31■□□□□ 0.36
SIX2Q9NPC8 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
SIX2Q9NPC8 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.31■□□□□ 0.36
SIX2Q9NPC8 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SIX2Q9NPC8 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
SIX2Q9NPC8 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SIX2Q9NPC8 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SIX2Q9NPC8 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms