Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
USB1Q9BQ65 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC14.59□□□□□ -0.07
USB1Q9BQ65 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC14.59□□□□□ -0.07
USB1Q9BQ65 AC105020.1-201ENST00000435356 2205 ntBASIC14.59□□□□□ -0.07
USB1Q9BQ65 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
USB1Q9BQ65 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC14.59□□□□□ -0.07
USB1Q9BQ65 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
USB1Q9BQ65 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
USB1Q9BQ65 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
USB1Q9BQ65 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC14.59□□□□□ -0.07
USB1Q9BQ65 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
USB1Q9BQ65 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
USB1Q9BQ65 LRRIQ3-203ENST00000370911 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
USB1Q9BQ65 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
USB1Q9BQ65 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
USB1Q9BQ65 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
USB1Q9BQ65 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
USB1Q9BQ65 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
USB1Q9BQ65 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
USB1Q9BQ65 GOLGA6L17P-202ENST00000614358 1398 ntBASIC14.59□□□□□ -0.07
USB1Q9BQ65 AC006277.1-201ENST00000624348 1610 ntBASIC14.59□□□□□ -0.07
USB1Q9BQ65 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
USB1Q9BQ65 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
USB1Q9BQ65 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
USB1Q9BQ65 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
USB1Q9BQ65 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC14.59□□□□□ -0.07
USB1Q9BQ65 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
USB1Q9BQ65 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC14.58□□□□□ -0.07
USB1Q9BQ65 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
USB1Q9BQ65 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
USB1Q9BQ65 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC14.58□□□□□ -0.08
USB1Q9BQ65 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
USB1Q9BQ65 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
USB1Q9BQ65 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
USB1Q9BQ65 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
USB1Q9BQ65 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
USB1Q9BQ65 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
USB1Q9BQ65 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
USB1Q9BQ65 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
USB1Q9BQ65 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
USB1Q9BQ65 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
USB1Q9BQ65 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
USB1Q9BQ65 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
USB1Q9BQ65 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
USB1Q9BQ65 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
USB1Q9BQ65 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
USB1Q9BQ65 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC14.58□□□□□ -0.08
USB1Q9BQ65 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC14.58□□□□□ -0.08
USB1Q9BQ65 AL139353.2-202ENST00000502430 1213 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
USB1Q9BQ65 TSPAN5-202ENST00000505184 1191 ntTSL 2 BASIC14.58□□□□□ -0.08
USB1Q9BQ65 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC14.58□□□□□ -0.08
USB1Q9BQ65 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
USB1Q9BQ65 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC14.58□□□□□ -0.08
USB1Q9BQ65 DAD1-205ENST00000543337 501 ntTSL 3 BASIC14.58□□□□□ -0.08
USB1Q9BQ65 AL512356.2-201ENST00000546955 174 ntBASIC14.58□□□□□ -0.08
USB1Q9BQ65 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
USB1Q9BQ65 AC009269.5-201ENST00000557800 755 ntTSL 3 BASIC14.58□□□□□ -0.08
USB1Q9BQ65 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
USB1Q9BQ65 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC14.58□□□□□ -0.08
USB1Q9BQ65 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC14.58□□□□□ -0.08
USB1Q9BQ65 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
USB1Q9BQ65 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
USB1Q9BQ65 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC14.58□□□□□ -0.08
USB1Q9BQ65 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
USB1Q9BQ65 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
USB1Q9BQ65 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC14.58□□□□□ -0.08
USB1Q9BQ65 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
USB1Q9BQ65 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
USB1Q9BQ65 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
USB1Q9BQ65 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
USB1Q9BQ65 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
USB1Q9BQ65 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
USB1Q9BQ65 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
USB1Q9BQ65 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
USB1Q9BQ65 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
USB1Q9BQ65 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
USB1Q9BQ65 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
USB1Q9BQ65 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
USB1Q9BQ65 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
USB1Q9BQ65 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
USB1Q9BQ65 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
USB1Q9BQ65 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
USB1Q9BQ65 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC14.57□□□□□ -0.08
USB1Q9BQ65 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC14.57□□□□□ -0.08
USB1Q9BQ65 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC14.57□□□□□ -0.08
USB1Q9BQ65 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC14.57□□□□□ -0.08
USB1Q9BQ65 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
USB1Q9BQ65 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC14.57□□□□□ -0.08
USB1Q9BQ65 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC14.57□□□□□ -0.08
USB1Q9BQ65 AC069335.1-201ENST00000489972 472 ntBASIC14.57□□□□□ -0.08
USB1Q9BQ65 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC14.57□□□□□ -0.08
USB1Q9BQ65 KRT8P48-201ENST00000515599 1220 ntBASIC14.57□□□□□ -0.08
USB1Q9BQ65 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC14.57□□□□□ -0.08
USB1Q9BQ65 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
USB1Q9BQ65 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
USB1Q9BQ65 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
USB1Q9BQ65 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC14.57□□□□□ -0.08
USB1Q9BQ65 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC14.57□□□□□ -0.08
USB1Q9BQ65 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC14.57□□□□□ -0.08
USB1Q9BQ65 RPS15-212ENST00000593052 629 ntTSL 2 BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms