Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 THTPA-206ENST00000556015 535 ntTSL 3 BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 AL078644.1-201ENST00000609881 752 ntBASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 SSR4P1-203ENST00000599569 2260 ntBASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 DKFZP434H168-201ENST00000567381 1905 ntBASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 AC073439.1-201ENST00000624121 1774 ntBASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 KRT18P34-201ENST00000488218 1270 ntBASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 CD63-210ENST00000550776 870 ntTSL 5 BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 AC018845.2-201ENST00000568326 409 ntBASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 AP001005.1-201ENST00000571755 1248 ntBASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 PGR-210ENST00000619228 3038 ntTSL 5 BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4AQ8WYN0 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 AC092474.2-201ENST00000424288 719 ntBASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC16.8■□□□□ 0.28
ATG4AQ8WYN0 SLC25A6P4-201ENST00000586535 553 ntBASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms