Protein–RNA interactions for Protein: P62987

UBA52, Ubiquitin-60S ribosomal protein L40, humanhuman

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBA52P62987 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC14.08□□□□□ -0.16
UBA52P62987 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC14.08□□□□□ -0.16
UBA52P62987 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
UBA52P62987 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
UBA52P62987 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
UBA52P62987 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
UBA52P62987 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC14.08□□□□□ -0.16
UBA52P62987 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
UBA52P62987 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
UBA52P62987 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
UBA52P62987 AC138035.3-201ENST00000622706 2791 ntBASIC14.08□□□□□ -0.16
UBA52P62987 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
UBA52P62987 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
UBA52P62987 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
UBA52P62987 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC14.08□□□□□ -0.16
UBA52P62987 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
UBA52P62987 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
UBA52P62987 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
UBA52P62987 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC14.07□□□□□ -0.16
UBA52P62987 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.07□□□□□ -0.16
UBA52P62987 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
UBA52P62987 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
UBA52P62987 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC14.07□□□□□ -0.16
UBA52P62987 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC14.07□□□□□ -0.16
UBA52P62987 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
UBA52P62987 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
UBA52P62987 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC14.07□□□□□ -0.16
UBA52P62987 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
UBA52P62987 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 AL020989.1-201ENST00000422979 469 ntBASIC14.07□□□□□ -0.16
UBA52P62987 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC14.07□□□□□ -0.16
UBA52P62987 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC14.07□□□□□ -0.16
UBA52P62987 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC14.07□□□□□ -0.16
UBA52P62987 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC14.07□□□□□ -0.16
UBA52P62987 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC14.07□□□□□ -0.16
UBA52P62987 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC14.07□□□□□ -0.16
UBA52P62987 MIR4751-201ENST00000578027 74 ntBASIC14.07□□□□□ -0.16
UBA52P62987 AL139327.4-201ENST00000612362 153 ntBASIC14.07□□□□□ -0.16
UBA52P62987 AC004706.3-202ENST00000621574 984 ntBASIC14.07□□□□□ -0.16
UBA52P62987 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC14.07□□□□□ -0.16
UBA52P62987 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC14.07□□□□□ -0.16
UBA52P62987 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC14.07□□□□□ -0.16
UBA52P62987 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
UBA52P62987 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
UBA52P62987 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
UBA52P62987 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC14.07□□□□□ -0.16
UBA52P62987 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 KRT8P47-201ENST00000604727 1398 ntBASIC14.07□□□□□ -0.16
UBA52P62987 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC14.07□□□□□ -0.16
UBA52P62987 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
UBA52P62987 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
UBA52P62987 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
UBA52P62987 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
UBA52P62987 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
UBA52P62987 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
UBA52P62987 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
UBA52P62987 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC14.06□□□□□ -0.16
UBA52P62987 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
UBA52P62987 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
UBA52P62987 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
UBA52P62987 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
UBA52P62987 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
UBA52P62987 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
UBA52P62987 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
UBA52P62987 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
UBA52P62987 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms