Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
RFX3P48380 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC15.31■□□□□ 0.04
RFX3P48380 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
RFX3P48380 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RFX3P48380 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC15.31■□□□□ 0.04
RFX3P48380 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC15.31■□□□□ 0.04
RFX3P48380 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15.31■□□□□ 0.04
RFX3P48380 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RFX3P48380 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RFX3P48380 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC15.31■□□□□ 0.04
RFX3P48380 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
RFX3P48380 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
RFX3P48380 AL513523.2-202ENST00000427283 2040 ntBASIC15.31■□□□□ 0.04
RFX3P48380 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC15.31■□□□□ 0.04
RFX3P48380 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
RFX3P48380 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFX3P48380 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFX3P48380 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFX3P48380 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC15.3■□□□□ 0.04
RFX3P48380 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFX3P48380 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFX3P48380 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
RFX3P48380 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFX3P48380 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFX3P48380 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFX3P48380 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFX3P48380 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFX3P48380 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFX3P48380 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFX3P48380 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFX3P48380 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
RFX3P48380 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFX3P48380 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RFX3P48380 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFX3P48380 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFX3P48380 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
RFX3P48380 AC140658.5-201ENST00000438532 169 ntBASIC15.3■□□□□ 0.04
RFX3P48380 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFX3P48380 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC15.3■□□□□ 0.04
RFX3P48380 PMS2P7-201ENST00000506558 1336 ntBASIC15.3■□□□□ 0.04
RFX3P48380 THTPA-204ENST00000554970 569 ntTSL 4 BASIC15.3■□□□□ 0.04
RFX3P48380 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFX3P48380 THTPA-206ENST00000556015 535 ntTSL 3 BASIC15.3■□□□□ 0.04
RFX3P48380 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.3■□□□□ 0.04
RFX3P48380 AC002347.1-201ENST00000569543 541 ntBASIC15.3■□□□□ 0.04
RFX3P48380 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.3■□□□□ 0.04
RFX3P48380 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RFX3P48380 AC016027.1-202ENST00000607927 1699 ntBASIC15.3■□□□□ 0.04
RFX3P48380 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFX3P48380 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15.3■□□□□ 0.04
RFX3P48380 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFX3P48380 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC15.3■□□□□ 0.04
RFX3P48380 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFX3P48380 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC15.3■□□□□ 0.04
RFX3P48380 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFX3P48380 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFX3P48380 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC15.29■□□□□ 0.04
RFX3P48380 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.29■□□□□ 0.04
RFX3P48380 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RFX3P48380 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFX3P48380 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RFX3P48380 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFX3P48380 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFX3P48380 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.29■□□□□ 0.04
RFX3P48380 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.29■□□□□ 0.04
RFX3P48380 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFX3P48380 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC15.29■□□□□ 0.04
RFX3P48380 LINC01144-201ENST00000626198 1710 ntBASIC15.29■□□□□ 0.04
RFX3P48380 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFX3P48380 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
RFX3P48380 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
RFX3P48380 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFX3P48380 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFX3P48380 NEK7-201ENST00000367383 586 ntTSL 2 BASIC15.29■□□□□ 0.04
RFX3P48380 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFX3P48380 FABP5-202ENST00000396359 986 ntTSL 5 BASIC15.29■□□□□ 0.04
RFX3P48380 HNRNPA1P28-201ENST00000424481 961 ntBASIC15.29■□□□□ 0.04
RFX3P48380 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC15.29■□□□□ 0.04
RFX3P48380 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC15.29■□□□□ 0.04
RFX3P48380 AL078644.1-201ENST00000609881 752 ntBASIC15.29■□□□□ 0.04
RFX3P48380 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFX3P48380 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFX3P48380 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFX3P48380 AC007950.2-201ENST00000615045 2347 ntBASIC15.29■□□□□ 0.04
RFX3P48380 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RFX3P48380 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC15.29■□□□□ 0.04
RFX3P48380 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFX3P48380 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC15.29■□□□□ 0.04
RFX3P48380 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RFX3P48380 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFX3P48380 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC15.29■□□□□ 0.04
RFX3P48380 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFX3P48380 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RFX3P48380 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC15.29■□□□□ 0.04
RFX3P48380 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFX3P48380 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFX3P48380 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.29■□□□□ 0.04
RFX3P48380 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFX3P48380 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFX3P48380 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms