Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC19.1■□□□□ 0.65
HMGB1P09429 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC19.1■□□□□ 0.65
HMGB1P09429 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB1P09429 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB1P09429 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC19.1■□□□□ 0.65
HMGB1P09429 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB1P09429 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
HMGB1P09429 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB1P09429 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB1P09429 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB1P09429 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB1P09429 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC19.09■□□□□ 0.65
HMGB1P09429 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB1P09429 AC008741.2-201ENST00000612792 3115 ntBASIC19.09■□□□□ 0.65
HMGB1P09429 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC19.09■□□□□ 0.65
HMGB1P09429 AL691432.1-201ENST00000596308 1422 ntBASIC19.09■□□□□ 0.65
HMGB1P09429 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB1P09429 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB1P09429 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB1P09429 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB1P09429 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
HMGB1P09429 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB1P09429 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB1P09429 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB1P09429 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB1P09429 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB1P09429 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB1P09429 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB1P09429 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB1P09429 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB1P09429 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
HMGB1P09429 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC19.09■□□□□ 0.65
HMGB1P09429 AP000344.2-201ENST00000512987 629 ntBASIC19.09■□□□□ 0.65
HMGB1P09429 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC19.09■□□□□ 0.65
HMGB1P09429 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB1P09429 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB1P09429 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
HMGB1P09429 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB1P09429 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB1P09429 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC19.09■□□□□ 0.65
HMGB1P09429 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB1P09429 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC19.09■□□□□ 0.65
HMGB1P09429 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB1P09429 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
HMGB1P09429 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC19.08■□□□□ 0.65
HMGB1P09429 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
HMGB1P09429 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
HMGB1P09429 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
HMGB1P09429 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
HMGB1P09429 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
HMGB1P09429 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
HMGB1P09429 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
HMGB1P09429 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
HMGB1P09429 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC19.08■□□□□ 0.65
HMGB1P09429 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
HMGB1P09429 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
HMGB1P09429 AP3S2-216ENST00000617003 1561 ntBASIC19.08■□□□□ 0.65
HMGB1P09429 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
HMGB1P09429 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
HMGB1P09429 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
HMGB1P09429 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
HMGB1P09429 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC19.08■□□□□ 0.64
HMGB1P09429 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC19.08■□□□□ 0.64
HMGB1P09429 AC005237.2-201ENST00000434368 219 ntBASIC19.08■□□□□ 0.64
HMGB1P09429 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
HMGB1P09429 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC19.08■□□□□ 0.64
HMGB1P09429 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC19.08■□□□□ 0.64
HMGB1P09429 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC19.08■□□□□ 0.64
HMGB1P09429 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC19.08■□□□□ 0.64
HMGB1P09429 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC19.08■□□□□ 0.64
HMGB1P09429 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
HMGB1P09429 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
HMGB1P09429 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
HMGB1P09429 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
HMGB1P09429 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
HMGB1P09429 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC19.08■□□□□ 0.64
HMGB1P09429 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
HMGB1P09429 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC19.08■□□□□ 0.64
HMGB1P09429 ABR-203ENST00000536794 2213 ntTSL 2 BASIC19.08■□□□□ 0.64
HMGB1P09429 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
HMGB1P09429 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
HMGB1P09429 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC19.08■□□□□ 0.64
HMGB1P09429 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGB1P09429 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
HMGB1P09429 STK24-203ENST00000397517 4578 ntTSL 2 BASIC19.07■□□□□ 0.64
HMGB1P09429 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC19.07■□□□□ 0.64
HMGB1P09429 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGB1P09429 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
HMGB1P09429 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC19.07■□□□□ 0.64
HMGB1P09429 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
HMGB1P09429 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGB1P09429 AC134407.2-201ENST00000625089 1978 ntBASIC19.07■□□□□ 0.64
HMGB1P09429 AC004987.2-201ENST00000395959 1148 ntBASIC19.07■□□□□ 0.64
HMGB1P09429 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC19.07■□□□□ 0.64
HMGB1P09429 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HMGB1P09429 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC19.07■□□□□ 0.64
HMGB1P09429 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC19.07■□□□□ 0.64
HMGB1P09429 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC19.07■□□□□ 0.64
HMGB1P09429 RARRES2P9-201ENST00000565168 469 ntBASIC19.07■□□□□ 0.64
HMGB1P09429 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms