Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LDLRP01130 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LDLRP01130 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC15.75■□□□□ 0.11
LDLRP01130 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LDLRP01130 AC126755.1-201ENST00000525846 6405 ntBASIC15.75■□□□□ 0.11
LDLRP01130 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
LDLRP01130 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
LDLRP01130 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC15.75■□□□□ 0.11
LDLRP01130 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC15.75■□□□□ 0.11
LDLRP01130 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC15.75■□□□□ 0.11
LDLRP01130 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
LDLRP01130 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
LDLRP01130 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LDLRP01130 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LDLRP01130 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC15.75■□□□□ 0.11
LDLRP01130 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
LDLRP01130 AC022532.1-201ENST00000624563 1728 ntBASIC15.75■□□□□ 0.11
LDLRP01130 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
LDLRP01130 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC15.75■□□□□ 0.11
LDLRP01130 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LDLRP01130 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC15.75■□□□□ 0.11
LDLRP01130 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
LDLRP01130 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
LDLRP01130 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
LDLRP01130 AC003669.1-201ENST00000334569 611 ntBASIC15.75■□□□□ 0.11
LDLRP01130 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
LDLRP01130 PTMS-202ENST00000389462 773 ntTSL 2 BASIC15.75■□□□□ 0.11
LDLRP01130 PRYP5-201ENST00000451909 266 ntBASIC15.75■□□□□ 0.11
LDLRP01130 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
LDLRP01130 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC15.75■□□□□ 0.11
LDLRP01130 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.75■□□□□ 0.11
LDLRP01130 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC15.75■□□□□ 0.11
LDLRP01130 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC15.75■□□□□ 0.11
LDLRP01130 AL139011.1-202ENST00000642063 584 ntBASIC15.75■□□□□ 0.11
LDLRP01130 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
LDLRP01130 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LDLRP01130 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
LDLRP01130 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LDLRP01130 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
LDLRP01130 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
LDLRP01130 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC15.75■□□□□ 0.11
LDLRP01130 SP100-205ENST00000409824 1802 ntTSL 5 BASIC15.75■□□□□ 0.11
LDLRP01130 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LDLRP01130 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC15.75■□□□□ 0.11
LDLRP01130 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
LDLRP01130 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LDLRP01130 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LDLRP01130 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
LDLRP01130 PMPCAP1-201ENST00000508114 1576 ntBASIC15.75■□□□□ 0.11
LDLRP01130 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
LDLRP01130 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
LDLRP01130 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LDLRP01130 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LDLRP01130 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
LDLRP01130 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LDLRP01130 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
LDLRP01130 GGT4P-201ENST00000623672 1708 ntBASIC15.74■□□□□ 0.11
LDLRP01130 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
LDLRP01130 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC15.74■□□□□ 0.11
LDLRP01130 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
LDLRP01130 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
LDLRP01130 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
LDLRP01130 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LDLRP01130 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC15.74■□□□□ 0.11
LDLRP01130 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LDLRP01130 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC15.74■□□□□ 0.11
LDLRP01130 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC15.74■□□□□ 0.11
LDLRP01130 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
LDLRP01130 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC15.74■□□□□ 0.11
LDLRP01130 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC15.74■□□□□ 0.11
LDLRP01130 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LDLRP01130 AC018845.2-201ENST00000568326 409 ntBASIC15.74■□□□□ 0.11
LDLRP01130 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
LDLRP01130 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC15.74■□□□□ 0.11
LDLRP01130 PRR29-209ENST00000582540 967 ntTSL 2 BASIC15.74■□□□□ 0.11
LDLRP01130 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC15.74■□□□□ 0.11
LDLRP01130 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LDLRP01130 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LDLRP01130 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LDLRP01130 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
LDLRP01130 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC15.74■□□□□ 0.11
LDLRP01130 SUPT20HL2-201ENST00000486479 2409 ntBASIC15.74■□□□□ 0.11
LDLRP01130 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
LDLRP01130 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LDLRP01130 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
LDLRP01130 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
LDLRP01130 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LDLRP01130 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
LDLRP01130 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LDLRP01130 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LDLRP01130 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC15.73■□□□□ 0.11
LDLRP01130 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LDLRP01130 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
LDLRP01130 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
LDLRP01130 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC15.73■□□□□ 0.11
LDLRP01130 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LDLRP01130 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC15.73■□□□□ 0.11
LDLRP01130 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
LDLRP01130 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LDLRP01130 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms