Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 FAM86C2P-203ENST00000528684 1004 ntBASIC15.58■□□□□ 0.08
SEMA3DO95025 IGHV3OR16-6-201ENST00000568775 360 ntBASIC15.58■□□□□ 0.08
SEMA3DO95025 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC15.58■□□□□ 0.08
SEMA3DO95025 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
SEMA3DO95025 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SEMA3DO95025 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SEMA3DO95025 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
SEMA3DO95025 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SEMA3DO95025 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SEMA3DO95025 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SEMA3DO95025 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC15.58■□□□□ 0.08
SEMA3DO95025 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SEMA3DO95025 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC15.58■□□□□ 0.08
SEMA3DO95025 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SEMA3DO95025 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SEMA3DO95025 AL589702.1-201ENST00000641229 1509 ntBASIC15.58■□□□□ 0.08
SEMA3DO95025 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
SEMA3DO95025 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC15.58■□□□□ 0.08
SEMA3DO95025 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.57■□□□□ 0.08
SEMA3DO95025 MYB-201ENST00000316528 3571 ntTSL 5 BASIC15.57■□□□□ 0.08
SEMA3DO95025 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
SEMA3DO95025 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC15.57■□□□□ 0.08
SEMA3DO95025 MYB-241ENST00000616088 3573 ntTSL 5 BASIC15.57■□□□□ 0.08
SEMA3DO95025 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
SEMA3DO95025 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
SEMA3DO95025 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC15.57■□□□□ 0.08
SEMA3DO95025 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
SEMA3DO95025 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
SEMA3DO95025 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC15.57■□□□□ 0.08
SEMA3DO95025 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
SEMA3DO95025 AC105917.1-201ENST00000506637 2539 ntBASIC15.57■□□□□ 0.08
SEMA3DO95025 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC15.57■□□□□ 0.08
SEMA3DO95025 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
SEMA3DO95025 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.57■□□□□ 0.08
SEMA3DO95025 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SEMA3DO95025 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SEMA3DO95025 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SEMA3DO95025 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SEMA3DO95025 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SEMA3DO95025 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SEMA3DO95025 AL365203.3-201ENST00000609742 2057 ntBASIC15.57■□□□□ 0.08
SEMA3DO95025 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SEMA3DO95025 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SEMA3DO95025 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SEMA3DO95025 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SEMA3DO95025 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SEMA3DO95025 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SEMA3DO95025 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.57■□□□□ 0.08
SEMA3DO95025 FAM58CP-201ENST00000435741 640 ntBASIC15.57■□□□□ 0.08
SEMA3DO95025 RN7SL589P-201ENST00000481268 310 ntBASIC15.57■□□□□ 0.08
SEMA3DO95025 AC105233.2-201ENST00000523697 349 ntBASIC15.57■□□□□ 0.08
SEMA3DO95025 AF228730.5-201ENST00000530288 346 ntBASIC15.57■□□□□ 0.08
SEMA3DO95025 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SEMA3DO95025 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC15.57■□□□□ 0.08
SEMA3DO95025 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC15.57■□□□□ 0.08
SEMA3DO95025 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC15.57■□□□□ 0.08
SEMA3DO95025 CITED2-204ENST00000618718 901 ntTSL 2 BASIC15.57■□□□□ 0.08
SEMA3DO95025 AC092902.6-201ENST00000641783 218 ntBASIC15.57■□□□□ 0.08
SEMA3DO95025 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SEMA3DO95025 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
SEMA3DO95025 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SEMA3DO95025 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.57■□□□□ 0.08
SEMA3DO95025 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.57■□□□□ 0.08
SEMA3DO95025 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
SEMA3DO95025 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SEMA3DO95025 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SEMA3DO95025 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
SEMA3DO95025 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SEMA3DO95025 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SEMA3DO95025 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.57■□□□□ 0.08
SEMA3DO95025 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC15.57■□□□□ 0.08
SEMA3DO95025 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
SEMA3DO95025 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
SEMA3DO95025 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
SEMA3DO95025 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
SEMA3DO95025 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC15.56■□□□□ 0.08
SEMA3DO95025 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SEMA3DO95025 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SEMA3DO95025 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SEMA3DO95025 AC024909.3-201ENST00000611513 2257 ntBASIC15.56■□□□□ 0.08
SEMA3DO95025 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC15.56■□□□□ 0.08
SEMA3DO95025 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC15.56■□□□□ 0.08
SEMA3DO95025 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
SEMA3DO95025 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SEMA3DO95025 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
SEMA3DO95025 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
SEMA3DO95025 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SEMA3DO95025 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
SEMA3DO95025 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SEMA3DO95025 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SEMA3DO95025 PMP22-202ENST00000395936 816 ntTSL 3 BASIC15.56■□□□□ 0.08
SEMA3DO95025 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.56■□□□□ 0.08
SEMA3DO95025 MIR940-201ENST00000401276 94 ntBASIC15.56■□□□□ 0.08
SEMA3DO95025 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC15.56■□□□□ 0.08
SEMA3DO95025 ADH5P3-201ENST00000433842 1137 ntBASIC15.56■□□□□ 0.08
SEMA3DO95025 ACTG1P14-201ENST00000446382 1122 ntBASIC15.56■□□□□ 0.08
SEMA3DO95025 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SEMA3DO95025 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
SEMA3DO95025 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.56■□□□□ 0.08
SEMA3DO95025 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms