Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
UPF3AQ9H1J1 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC26.58■■□□□ 1.85
UPF3AQ9H1J1 SSSCA1-AS1-201ENST00000567594 614 ntBASIC26.58■■□□□ 1.85
UPF3AQ9H1J1 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC26.58■■□□□ 1.85
UPF3AQ9H1J1 SHF-208ENST00000560734 1731 ntTSL 3 BASIC26.57■■□□□ 1.84
UPF3AQ9H1J1 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC26.57■■□□□ 1.84
UPF3AQ9H1J1 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC26.57■■□□□ 1.84
UPF3AQ9H1J1 AL512631.2-201ENST00000604634 923 ntBASIC26.57■■□□□ 1.84
UPF3AQ9H1J1 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
UPF3AQ9H1J1 AF131216.4-201ENST00000638924 1588 ntBASIC26.56■■□□□ 1.84
UPF3AQ9H1J1 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
UPF3AQ9H1J1 QDPR-206ENST00000508623 601 ntTSL 3 BASIC26.56■■□□□ 1.84
UPF3AQ9H1J1 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
UPF3AQ9H1J1 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC26.56■■□□□ 1.84
UPF3AQ9H1J1 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC26.55■■□□□ 1.84
UPF3AQ9H1J1 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC26.55■■□□□ 1.84
UPF3AQ9H1J1 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC26.55■■□□□ 1.84
UPF3AQ9H1J1 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC26.55■■□□□ 1.84
UPF3AQ9H1J1 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
UPF3AQ9H1J1 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
UPF3AQ9H1J1 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC26.54■■□□□ 1.84
UPF3AQ9H1J1 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC26.54■■□□□ 1.84
UPF3AQ9H1J1 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC26.54■■□□□ 1.84
UPF3AQ9H1J1 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC26.54■■□□□ 1.84
UPF3AQ9H1J1 CLTA-210ENST00000540080 989 ntTSL 2 BASIC26.54■■□□□ 1.84
UPF3AQ9H1J1 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC26.54■■□□□ 1.84
UPF3AQ9H1J1 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC26.54■■□□□ 1.84
UPF3AQ9H1J1 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC26.54■■□□□ 1.84
UPF3AQ9H1J1 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
UPF3AQ9H1J1 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
UPF3AQ9H1J1 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
UPF3AQ9H1J1 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
UPF3AQ9H1J1 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
UPF3AQ9H1J1 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
UPF3AQ9H1J1 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
UPF3AQ9H1J1 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
UPF3AQ9H1J1 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC26.53■■□□□ 1.84
UPF3AQ9H1J1 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
UPF3AQ9H1J1 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
UPF3AQ9H1J1 AC096631.2-201ENST00000436136 790 ntBASIC26.52■■□□□ 1.84
UPF3AQ9H1J1 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC26.52■■□□□ 1.84
UPF3AQ9H1J1 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC26.52■■□□□ 1.84
UPF3AQ9H1J1 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
UPF3AQ9H1J1 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC26.51■■□□□ 1.84
UPF3AQ9H1J1 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
UPF3AQ9H1J1 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC26.51■■□□□ 1.83
UPF3AQ9H1J1 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
UPF3AQ9H1J1 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC26.51■■□□□ 1.83
UPF3AQ9H1J1 AC005837.3-201ENST00000612163 286 ntBASIC26.51■■□□□ 1.83
UPF3AQ9H1J1 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
UPF3AQ9H1J1 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
UPF3AQ9H1J1 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
UPF3AQ9H1J1 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
UPF3AQ9H1J1 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
UPF3AQ9H1J1 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC26.5■■□□□ 1.83
UPF3AQ9H1J1 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC26.5■■□□□ 1.83
UPF3AQ9H1J1 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
UPF3AQ9H1J1 CD72-202ENST00000378430 585 ntTSL 3 BASIC26.49■■□□□ 1.83
UPF3AQ9H1J1 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC26.49■■□□□ 1.83
UPF3AQ9H1J1 AC133561.4-201ENST00000566112 224 ntBASIC26.49■■□□□ 1.83
UPF3AQ9H1J1 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC26.49■■□□□ 1.83
UPF3AQ9H1J1 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
UPF3AQ9H1J1 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC26.49■■□□□ 1.83
UPF3AQ9H1J1 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
UPF3AQ9H1J1 AK3-203ENST00000447596 705 ntTSL 2 BASIC26.48■■□□□ 1.83
UPF3AQ9H1J1 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC26.48■■□□□ 1.83
UPF3AQ9H1J1 RASSF1-AS1-201ENST00000629828 790 ntBASIC26.48■■□□□ 1.83
UPF3AQ9H1J1 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
UPF3AQ9H1J1 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
UPF3AQ9H1J1 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC26.46■■□□□ 1.83
UPF3AQ9H1J1 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC26.46■■□□□ 1.83
UPF3AQ9H1J1 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
UPF3AQ9H1J1 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC26.45■■□□□ 1.83
UPF3AQ9H1J1 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
UPF3AQ9H1J1 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC26.45■■□□□ 1.82
UPF3AQ9H1J1 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
UPF3AQ9H1J1 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC26.45■■□□□ 1.82
UPF3AQ9H1J1 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC26.45■■□□□ 1.82
UPF3AQ9H1J1 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
UPF3AQ9H1J1 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC26.45■■□□□ 1.82
UPF3AQ9H1J1 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC26.44■■□□□ 1.82
UPF3AQ9H1J1 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
UPF3AQ9H1J1 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
UPF3AQ9H1J1 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC26.44■■□□□ 1.82
UPF3AQ9H1J1 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC26.43■■□□□ 1.82
UPF3AQ9H1J1 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC26.43■■□□□ 1.82
UPF3AQ9H1J1 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC26.43■■□□□ 1.82
UPF3AQ9H1J1 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
UPF3AQ9H1J1 TFPT-201ENST00000391757 774 ntTSL 5 BASIC26.43■■□□□ 1.82
UPF3AQ9H1J1 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC26.43■■□□□ 1.82
UPF3AQ9H1J1 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC26.43■■□□□ 1.82
UPF3AQ9H1J1 FOXO3B-201ENST00000395675 1928 ntBASIC26.43■■□□□ 1.82
UPF3AQ9H1J1 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
UPF3AQ9H1J1 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
UPF3AQ9H1J1 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC26.42■■□□□ 1.82
UPF3AQ9H1J1 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
UPF3AQ9H1J1 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
UPF3AQ9H1J1 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
UPF3AQ9H1J1 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
UPF3AQ9H1J1 AC142086.6-201ENST00000621154 1765 ntBASIC26.41■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms