Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC22.25■■□□□ 1.15
PTCHD1Q96NR3 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PTCHD1Q96NR3 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC22.25■■□□□ 1.15
PTCHD1Q96NR3 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC22.25■■□□□ 1.15
PTCHD1Q96NR3 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PTCHD1Q96NR3 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
PTCHD1Q96NR3 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
PTCHD1Q96NR3 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
PTCHD1Q96NR3 AC022616.5-201ENST00000518796 181 ntBASIC22.24■■□□□ 1.15
PTCHD1Q96NR3 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PTCHD1Q96NR3 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PTCHD1Q96NR3 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC22.24■■□□□ 1.15
PTCHD1Q96NR3 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PTCHD1Q96NR3 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC22.24■■□□□ 1.15
PTCHD1Q96NR3 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PTCHD1Q96NR3 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PTCHD1Q96NR3 AL592295.1-201ENST00000400984 884 ntBASIC22.23■■□□□ 1.15
PTCHD1Q96NR3 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC22.23■■□□□ 1.15
PTCHD1Q96NR3 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC22.23■■□□□ 1.15
PTCHD1Q96NR3 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PTCHD1Q96NR3 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
PTCHD1Q96NR3 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PTCHD1Q96NR3 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PTCHD1Q96NR3 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PTCHD1Q96NR3 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
PTCHD1Q96NR3 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC22.22■■□□□ 1.15
PTCHD1Q96NR3 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC22.21■■□□□ 1.15
PTCHD1Q96NR3 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC22.21■■□□□ 1.15
PTCHD1Q96NR3 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC22.21■■□□□ 1.15
PTCHD1Q96NR3 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PTCHD1Q96NR3 FOXO3B-201ENST00000395675 1928 ntBASIC22.21■■□□□ 1.15
PTCHD1Q96NR3 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
PTCHD1Q96NR3 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PTCHD1Q96NR3 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC22.21■■□□□ 1.15
PTCHD1Q96NR3 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
PTCHD1Q96NR3 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
PTCHD1Q96NR3 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC22.19■■□□□ 1.14
PTCHD1Q96NR3 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PTCHD1Q96NR3 AC103724.3-201ENST00000564481 992 ntBASIC22.19■■□□□ 1.14
PTCHD1Q96NR3 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC22.19■■□□□ 1.14
PTCHD1Q96NR3 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC22.19■■□□□ 1.14
PTCHD1Q96NR3 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PTCHD1Q96NR3 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
PTCHD1Q96NR3 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PTCHD1Q96NR3 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PTCHD1Q96NR3 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
PTCHD1Q96NR3 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PTCHD1Q96NR3 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
PTCHD1Q96NR3 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PTCHD1Q96NR3 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
PTCHD1Q96NR3 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PTCHD1Q96NR3 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PTCHD1Q96NR3 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
PTCHD1Q96NR3 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
PTCHD1Q96NR3 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
PTCHD1Q96NR3 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC22.18■■□□□ 1.14
PTCHD1Q96NR3 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PTCHD1Q96NR3 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
PTCHD1Q96NR3 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PTCHD1Q96NR3 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
PTCHD1Q96NR3 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC22.17■■□□□ 1.14
PTCHD1Q96NR3 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
PTCHD1Q96NR3 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC22.17■■□□□ 1.14
PTCHD1Q96NR3 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
PTCHD1Q96NR3 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
PTCHD1Q96NR3 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PTCHD1Q96NR3 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
PTCHD1Q96NR3 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
PTCHD1Q96NR3 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PTCHD1Q96NR3 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC22.16■■□□□ 1.14
PTCHD1Q96NR3 AL031848.2-201ENST00000607670 837 ntBASIC22.16■■□□□ 1.14
PTCHD1Q96NR3 AC020928.2-201ENST00000588717 2197 ntBASIC22.16■■□□□ 1.14
PTCHD1Q96NR3 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
PTCHD1Q96NR3 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PTCHD1Q96NR3 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PTCHD1Q96NR3 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC22.15■■□□□ 1.14
PTCHD1Q96NR3 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC22.15■■□□□ 1.14
PTCHD1Q96NR3 CEBPA-AS1-201ENST00000592982 2198 ntBASIC22.15■■□□□ 1.14
PTCHD1Q96NR3 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PTCHD1Q96NR3 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PTCHD1Q96NR3 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PTCHD1Q96NR3 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC22.14■■□□□ 1.14
PTCHD1Q96NR3 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.14
PTCHD1Q96NR3 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
PTCHD1Q96NR3 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
PTCHD1Q96NR3 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
PTCHD1Q96NR3 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
PTCHD1Q96NR3 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC22.13■■□□□ 1.13
PTCHD1Q96NR3 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC22.13■■□□□ 1.13
PTCHD1Q96NR3 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
PTCHD1Q96NR3 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PTCHD1Q96NR3 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
PTCHD1Q96NR3 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC22.13■■□□□ 1.13
PTCHD1Q96NR3 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC22.13■■□□□ 1.13
PTCHD1Q96NR3 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PTCHD1Q96NR3 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC22.12■■□□□ 1.13
PTCHD1Q96NR3 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
PTCHD1Q96NR3 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
PTCHD1Q96NR3 KRT18P24-201ENST00000344739 1156 ntBASIC22.12■■□□□ 1.13
PTCHD1Q96NR3 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC22.12■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms