Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
VPS52Q8N1B4 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC25.55■■□□□ 1.68
VPS52Q8N1B4 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
VPS52Q8N1B4 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC25.55■■□□□ 1.68
VPS52Q8N1B4 TSPY9P-201ENST00000440215 945 ntBASIC25.55■■□□□ 1.68
VPS52Q8N1B4 TSPY11P-201ENST00000442607 1045 ntBASIC25.55■■□□□ 1.68
VPS52Q8N1B4 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
VPS52Q8N1B4 LSM7-203ENST00000585409 512 ntTSL 2 BASIC25.55■■□□□ 1.68
VPS52Q8N1B4 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC25.55■■□□□ 1.68
VPS52Q8N1B4 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC25.55■■□□□ 1.68
VPS52Q8N1B4 AC021242.3-201ENST00000607598 1377 ntBASIC25.55■■□□□ 1.68
VPS52Q8N1B4 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC25.54■■□□□ 1.68
VPS52Q8N1B4 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC25.54■■□□□ 1.68
VPS52Q8N1B4 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC25.54■■□□□ 1.68
VPS52Q8N1B4 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC25.54■■□□□ 1.68
VPS52Q8N1B4 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
VPS52Q8N1B4 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC25.54■■□□□ 1.68
VPS52Q8N1B4 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
VPS52Q8N1B4 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC25.54■■□□□ 1.68
VPS52Q8N1B4 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC25.54■■□□□ 1.68
VPS52Q8N1B4 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC25.53■■□□□ 1.68
VPS52Q8N1B4 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC25.53■■□□□ 1.68
VPS52Q8N1B4 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
VPS52Q8N1B4 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC25.52■■□□□ 1.68
VPS52Q8N1B4 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
VPS52Q8N1B4 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC25.52■■□□□ 1.68
VPS52Q8N1B4 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC25.52■■□□□ 1.68
VPS52Q8N1B4 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
VPS52Q8N1B4 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC25.52■■□□□ 1.68
VPS52Q8N1B4 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC25.52■■□□□ 1.68
VPS52Q8N1B4 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
VPS52Q8N1B4 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
VPS52Q8N1B4 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.68
VPS52Q8N1B4 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
VPS52Q8N1B4 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC25.51■■□□□ 1.67
VPS52Q8N1B4 PEMT-206ENST00000435340 960 ntTSL 5 BASIC25.51■■□□□ 1.67
VPS52Q8N1B4 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC25.51■■□□□ 1.67
VPS52Q8N1B4 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
VPS52Q8N1B4 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.67
VPS52Q8N1B4 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC25.5■■□□□ 1.67
VPS52Q8N1B4 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC25.5■■□□□ 1.67
VPS52Q8N1B4 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC25.5■■□□□ 1.67
VPS52Q8N1B4 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
VPS52Q8N1B4 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
VPS52Q8N1B4 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
VPS52Q8N1B4 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
VPS52Q8N1B4 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC25.49■■□□□ 1.67
VPS52Q8N1B4 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
VPS52Q8N1B4 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC25.49■■□□□ 1.67
VPS52Q8N1B4 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC25.49■■□□□ 1.67
VPS52Q8N1B4 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
VPS52Q8N1B4 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC25.49■■□□□ 1.67
VPS52Q8N1B4 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC25.48■■□□□ 1.67
VPS52Q8N1B4 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC25.48■■□□□ 1.67
VPS52Q8N1B4 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC25.48■■□□□ 1.67
VPS52Q8N1B4 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC25.48■■□□□ 1.67
VPS52Q8N1B4 AC092028.1-203ENST00000608262 953 ntBASIC25.48■■□□□ 1.67
VPS52Q8N1B4 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
VPS52Q8N1B4 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC25.47■■□□□ 1.67
VPS52Q8N1B4 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC25.47■■□□□ 1.67
VPS52Q8N1B4 MIR4281-201ENST00000580852 62 ntBASIC25.47■■□□□ 1.67
VPS52Q8N1B4 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
VPS52Q8N1B4 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC25.46■■□□□ 1.67
VPS52Q8N1B4 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC25.46■■□□□ 1.67
VPS52Q8N1B4 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC25.46■■□□□ 1.67
VPS52Q8N1B4 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC25.45■■□□□ 1.67
VPS52Q8N1B4 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
VPS52Q8N1B4 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
VPS52Q8N1B4 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
VPS52Q8N1B4 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC25.45■■□□□ 1.66
VPS52Q8N1B4 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC25.44■■□□□ 1.66
VPS52Q8N1B4 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC25.44■■□□□ 1.66
VPS52Q8N1B4 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC25.44■■□□□ 1.66
VPS52Q8N1B4 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC25.44■■□□□ 1.66
VPS52Q8N1B4 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
VPS52Q8N1B4 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC25.44■■□□□ 1.66
VPS52Q8N1B4 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
VPS52Q8N1B4 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
VPS52Q8N1B4 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
VPS52Q8N1B4 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC25.43■■□□□ 1.66
VPS52Q8N1B4 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
VPS52Q8N1B4 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC25.43■■□□□ 1.66
VPS52Q8N1B4 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC25.43■■□□□ 1.66
VPS52Q8N1B4 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
VPS52Q8N1B4 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC25.42■■□□□ 1.66
VPS52Q8N1B4 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC25.42■■□□□ 1.66
VPS52Q8N1B4 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC25.42■■□□□ 1.66
VPS52Q8N1B4 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
VPS52Q8N1B4 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC25.41■■□□□ 1.66
VPS52Q8N1B4 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC25.41■■□□□ 1.66
VPS52Q8N1B4 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC25.41■■□□□ 1.66
VPS52Q8N1B4 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
VPS52Q8N1B4 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
VPS52Q8N1B4 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC25.41■■□□□ 1.66
VPS52Q8N1B4 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
VPS52Q8N1B4 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
VPS52Q8N1B4 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
VPS52Q8N1B4 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
VPS52Q8N1B4 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC25.4■■□□□ 1.66
VPS52Q8N1B4 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC25.4■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms