Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.44■■□□□ 1.02
RNFT1Q5M7Z0 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.44■■□□□ 1.02
RNFT1Q5M7Z0 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
RNFT1Q5M7Z0 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RNFT1Q5M7Z0 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.44■■□□□ 1.02
RNFT1Q5M7Z0 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RNFT1Q5M7Z0 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RNFT1Q5M7Z0 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC21.43■■□□□ 1.02
RNFT1Q5M7Z0 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC21.43■■□□□ 1.02
RNFT1Q5M7Z0 AC096887.2-201ENST00000623443 1957 ntBASIC21.43■■□□□ 1.02
RNFT1Q5M7Z0 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
RNFT1Q5M7Z0 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.43■■□□□ 1.02
RNFT1Q5M7Z0 KRT16P3-201ENST00000439127 1283 ntBASIC21.43■■□□□ 1.02
RNFT1Q5M7Z0 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
RNFT1Q5M7Z0 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC21.43■■□□□ 1.02
RNFT1Q5M7Z0 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.43■■□□□ 1.02
RNFT1Q5M7Z0 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RNFT1Q5M7Z0 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
RNFT1Q5M7Z0 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
RNFT1Q5M7Z0 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
RNFT1Q5M7Z0 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RNFT1Q5M7Z0 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RNFT1Q5M7Z0 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RNFT1Q5M7Z0 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.42■■□□□ 1.02
RNFT1Q5M7Z0 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.42■■□□□ 1.02
RNFT1Q5M7Z0 AC092028.1-203ENST00000608262 953 ntBASIC21.42■■□□□ 1.02
RNFT1Q5M7Z0 AC011551.1-201ENST00000614101 683 ntBASIC21.42■■□□□ 1.02
RNFT1Q5M7Z0 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
RNFT1Q5M7Z0 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RNFT1Q5M7Z0 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RNFT1Q5M7Z0 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RNFT1Q5M7Z0 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
RNFT1Q5M7Z0 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
RNFT1Q5M7Z0 FOXO3B-201ENST00000395675 1928 ntBASIC21.4■■□□□ 1.02
RNFT1Q5M7Z0 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
RNFT1Q5M7Z0 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC21.4■■□□□ 1.02
RNFT1Q5M7Z0 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
RNFT1Q5M7Z0 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
RNFT1Q5M7Z0 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
RNFT1Q5M7Z0 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RNFT1Q5M7Z0 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.39■■□□□ 1.01
RNFT1Q5M7Z0 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RNFT1Q5M7Z0 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
RNFT1Q5M7Z0 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.38■■□□□ 1.01
RNFT1Q5M7Z0 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
RNFT1Q5M7Z0 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC21.38■■□□□ 1.01
RNFT1Q5M7Z0 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RNFT1Q5M7Z0 AL121749.1-202ENST00000609313 2153 ntBASIC21.38■■□□□ 1.01
RNFT1Q5M7Z0 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RNFT1Q5M7Z0 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
RNFT1Q5M7Z0 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RNFT1Q5M7Z0 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RNFT1Q5M7Z0 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.37■■□□□ 1.01
RNFT1Q5M7Z0 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
RNFT1Q5M7Z0 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RNFT1Q5M7Z0 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC21.37■■□□□ 1.01
RNFT1Q5M7Z0 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.37■■□□□ 1.01
RNFT1Q5M7Z0 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC21.36■■□□□ 1.01
RNFT1Q5M7Z0 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC21.36■■□□□ 1.01
RNFT1Q5M7Z0 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC21.36■■□□□ 1.01
RNFT1Q5M7Z0 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.36■■□□□ 1.01
RNFT1Q5M7Z0 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC21.36■■□□□ 1.01
RNFT1Q5M7Z0 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RNFT1Q5M7Z0 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNFT1Q5M7Z0 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC21.36■■□□□ 1.01
RNFT1Q5M7Z0 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
RNFT1Q5M7Z0 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC21.35■■□□□ 1.01
RNFT1Q5M7Z0 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RNFT1Q5M7Z0 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC21.35■■□□□ 1.01
RNFT1Q5M7Z0 SSSCA1-AS1-201ENST00000567594 614 ntBASIC21.35■■□□□ 1.01
RNFT1Q5M7Z0 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC21.35■■□□□ 1.01
RNFT1Q5M7Z0 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNFT1Q5M7Z0 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RNFT1Q5M7Z0 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC21.35■■□□□ 1.01
RNFT1Q5M7Z0 AC008406.3-201ENST00000620001 1374 ntBASIC21.35■■□□□ 1.01
RNFT1Q5M7Z0 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC21.35■■□□□ 1.01
RNFT1Q5M7Z0 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC21.35■■□□□ 1.01
RNFT1Q5M7Z0 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RNFT1Q5M7Z0 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RNFT1Q5M7Z0 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RNFT1Q5M7Z0 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
RNFT1Q5M7Z0 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RNFT1Q5M7Z0 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RNFT1Q5M7Z0 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.34■■□□□ 1.01
RNFT1Q5M7Z0 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RNFT1Q5M7Z0 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RNFT1Q5M7Z0 AF131216.4-201ENST00000638924 1588 ntBASIC21.34■■□□□ 1.01
RNFT1Q5M7Z0 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
RNFT1Q5M7Z0 AC097639.1-201ENST00000565519 1891 ntBASIC21.33■■□□□ 1.01
RNFT1Q5M7Z0 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
RNFT1Q5M7Z0 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC21.33■■□□□ 1
RNFT1Q5M7Z0 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
RNFT1Q5M7Z0 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
RNFT1Q5M7Z0 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.32■■□□□ 1
RNFT1Q5M7Z0 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.32■■□□□ 1
RNFT1Q5M7Z0 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RNFT1Q5M7Z0 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC21.32■■□□□ 1
RNFT1Q5M7Z0 AC010501.1-201ENST00000606270 1962 ntBASIC21.32■■□□□ 1
RNFT1Q5M7Z0 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
RNFT1Q5M7Z0 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms