Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC27.87■■■□□ 2.05
SHROOM1Q2M3G4 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC27.87■■■□□ 2.05
SHROOM1Q2M3G4 AC092028.1-203ENST00000608262 953 ntBASIC27.87■■■□□ 2.05
SHROOM1Q2M3G4 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC27.87■■■□□ 2.05
SHROOM1Q2M3G4 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC27.87■■■□□ 2.05
SHROOM1Q2M3G4 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
SHROOM1Q2M3G4 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC27.87■■■□□ 2.05
SHROOM1Q2M3G4 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
SHROOM1Q2M3G4 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
SHROOM1Q2M3G4 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
SHROOM1Q2M3G4 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC27.86■■■□□ 2.05
SHROOM1Q2M3G4 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC27.85■■■□□ 2.05
SHROOM1Q2M3G4 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC27.85■■■□□ 2.05
SHROOM1Q2M3G4 GAK-223ENST00000628912 497 ntTSL 5 BASIC27.85■■■□□ 2.05
SHROOM1Q2M3G4 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC27.85■■■□□ 2.05
SHROOM1Q2M3G4 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC27.85■■■□□ 2.05
SHROOM1Q2M3G4 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
SHROOM1Q2M3G4 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
SHROOM1Q2M3G4 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC27.84■■■□□ 2.05
SHROOM1Q2M3G4 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC27.84■■■□□ 2.05
SHROOM1Q2M3G4 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC27.84■■■□□ 2.05
SHROOM1Q2M3G4 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC27.84■■■□□ 2.05
SHROOM1Q2M3G4 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
SHROOM1Q2M3G4 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC27.84■■■□□ 2.05
SHROOM1Q2M3G4 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC27.83■■■□□ 2.05
SHROOM1Q2M3G4 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC27.83■■■□□ 2.05
SHROOM1Q2M3G4 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC27.83■■■□□ 2.05
SHROOM1Q2M3G4 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
SHROOM1Q2M3G4 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC27.83■■■□□ 2.04
SHROOM1Q2M3G4 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.04
SHROOM1Q2M3G4 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC27.82■■■□□ 2.04
SHROOM1Q2M3G4 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
SHROOM1Q2M3G4 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC27.82■■■□□ 2.04
SHROOM1Q2M3G4 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC27.82■■■□□ 2.04
SHROOM1Q2M3G4 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC27.82■■■□□ 2.04
SHROOM1Q2M3G4 LSM7-203ENST00000585409 512 ntTSL 2 BASIC27.82■■■□□ 2.04
SHROOM1Q2M3G4 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC27.82■■■□□ 2.04
SHROOM1Q2M3G4 FOXO3B-201ENST00000395675 1928 ntBASIC27.81■■■□□ 2.04
SHROOM1Q2M3G4 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC27.81■■■□□ 2.04
SHROOM1Q2M3G4 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC27.81■■■□□ 2.04
SHROOM1Q2M3G4 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC27.81■■■□□ 2.04
SHROOM1Q2M3G4 AL121749.1-202ENST00000609313 2153 ntBASIC27.81■■■□□ 2.04
SHROOM1Q2M3G4 AC008406.3-201ENST00000620001 1374 ntBASIC27.81■■■□□ 2.04
SHROOM1Q2M3G4 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
SHROOM1Q2M3G4 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
SHROOM1Q2M3G4 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC27.8■■■□□ 2.04
SHROOM1Q2M3G4 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC27.8■■■□□ 2.04
SHROOM1Q2M3G4 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
SHROOM1Q2M3G4 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC27.8■■■□□ 2.04
SHROOM1Q2M3G4 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC27.8■■■□□ 2.04
SHROOM1Q2M3G4 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
SHROOM1Q2M3G4 AF131216.4-201ENST00000638924 1588 ntBASIC27.79■■■□□ 2.04
SHROOM1Q2M3G4 AC019069.1-201ENST00000610008 1333 ntBASIC27.79■■■□□ 2.04
SHROOM1Q2M3G4 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC27.79■■■□□ 2.04
SHROOM1Q2M3G4 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC27.79■■■□□ 2.04
SHROOM1Q2M3G4 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC27.79■■■□□ 2.04
SHROOM1Q2M3G4 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC27.79■■■□□ 2.04
SHROOM1Q2M3G4 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
SHROOM1Q2M3G4 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC27.78■■■□□ 2.04
SHROOM1Q2M3G4 TRIR-202ENST00000588213 841 ntTSL 3 BASIC27.78■■■□□ 2.04
SHROOM1Q2M3G4 AC011551.1-201ENST00000614101 683 ntBASIC27.78■■■□□ 2.04
SHROOM1Q2M3G4 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
SHROOM1Q2M3G4 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC27.77■■■□□ 2.04
SHROOM1Q2M3G4 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC27.77■■■□□ 2.04
SHROOM1Q2M3G4 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
SHROOM1Q2M3G4 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC27.77■■■□□ 2.04
SHROOM1Q2M3G4 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
SHROOM1Q2M3G4 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.04
SHROOM1Q2M3G4 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
SHROOM1Q2M3G4 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
SHROOM1Q2M3G4 PEMT-206ENST00000435340 960 ntTSL 5 BASIC27.76■■■□□ 2.03
SHROOM1Q2M3G4 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
SHROOM1Q2M3G4 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC27.76■■■□□ 2.03
SHROOM1Q2M3G4 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC27.76■■■□□ 2.03
SHROOM1Q2M3G4 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
SHROOM1Q2M3G4 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
SHROOM1Q2M3G4 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC27.75■■■□□ 2.03
SHROOM1Q2M3G4 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC27.75■■■□□ 2.03
SHROOM1Q2M3G4 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC27.75■■■□□ 2.03
SHROOM1Q2M3G4 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC27.75■■■□□ 2.03
SHROOM1Q2M3G4 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
SHROOM1Q2M3G4 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC27.75■■■□□ 2.03
SHROOM1Q2M3G4 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
SHROOM1Q2M3G4 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC27.74■■■□□ 2.03
SHROOM1Q2M3G4 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC27.74■■■□□ 2.03
SHROOM1Q2M3G4 LSM4-201ENST00000252816 986 ntTSL 2 BASIC27.74■■■□□ 2.03
SHROOM1Q2M3G4 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC27.74■■■□□ 2.03
SHROOM1Q2M3G4 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
SHROOM1Q2M3G4 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
SHROOM1Q2M3G4 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
SHROOM1Q2M3G4 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC27.73■■■□□ 2.03
SHROOM1Q2M3G4 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
SHROOM1Q2M3G4 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
SHROOM1Q2M3G4 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC27.73■■■□□ 2.03
SHROOM1Q2M3G4 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
SHROOM1Q2M3G4 AC131281.2-201ENST00000520478 145 ntBASIC27.73■■■□□ 2.03
SHROOM1Q2M3G4 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
SHROOM1Q2M3G4 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
SHROOM1Q2M3G4 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC27.73■■■□□ 2.03
SHROOM1Q2M3G4 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms