Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HIST1H1AQ02539 CEP120-209ENST00000515110 606 ntTSL 3 BASIC17.89■□□□□ 0.45
HIST1H1AQ02539 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC17.89■□□□□ 0.45
HIST1H1AQ02539 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HIST1H1AQ02539 AC138932.3-201ENST00000567634 1902 ntBASIC17.89■□□□□ 0.45
HIST1H1AQ02539 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HIST1H1AQ02539 REST-210ENST00000638187 1334 ntTSL 5 BASIC17.89■□□□□ 0.45
HIST1H1AQ02539 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
HIST1H1AQ02539 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HIST1H1AQ02539 AL139125.2-201ENST00000623134 1869 ntBASIC17.88■□□□□ 0.45
HIST1H1AQ02539 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HIST1H1AQ02539 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC17.88■□□□□ 0.45
HIST1H1AQ02539 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
HIST1H1AQ02539 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HIST1H1AQ02539 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HIST1H1AQ02539 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
HIST1H1AQ02539 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
HIST1H1AQ02539 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC17.88■□□□□ 0.45
HIST1H1AQ02539 AC025884.2-201ENST00000553429 711 ntBASIC17.88■□□□□ 0.45
HIST1H1AQ02539 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
HIST1H1AQ02539 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HIST1H1AQ02539 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
HIST1H1AQ02539 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HIST1H1AQ02539 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HIST1H1AQ02539 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HIST1H1AQ02539 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC17.87■□□□□ 0.45
HIST1H1AQ02539 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HIST1H1AQ02539 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HIST1H1AQ02539 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HIST1H1AQ02539 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HIST1H1AQ02539 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HIST1H1AQ02539 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HIST1H1AQ02539 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HIST1H1AQ02539 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HIST1H1AQ02539 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HIST1H1AQ02539 AC092296.2-201ENST00000589470 999 ntBASIC17.86■□□□□ 0.45
HIST1H1AQ02539 SRP68-213ENST00000629930 165 ntTSL 5 BASIC17.86■□□□□ 0.45
HIST1H1AQ02539 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC17.86■□□□□ 0.45
HIST1H1AQ02539 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC17.86■□□□□ 0.45
HIST1H1AQ02539 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HIST1H1AQ02539 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HIST1H1AQ02539 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HIST1H1AQ02539 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HIST1H1AQ02539 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
HIST1H1AQ02539 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
HIST1H1AQ02539 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC17.85■□□□□ 0.45
HIST1H1AQ02539 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HIST1H1AQ02539 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC17.84■□□□□ 0.45
HIST1H1AQ02539 AC097639.1-201ENST00000565519 1891 ntBASIC17.84■□□□□ 0.45
HIST1H1AQ02539 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC17.84■□□□□ 0.45
HIST1H1AQ02539 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
HIST1H1AQ02539 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
HIST1H1AQ02539 ECEL1P2-201ENST00000461596 1295 ntBASIC17.84■□□□□ 0.45
HIST1H1AQ02539 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC17.84■□□□□ 0.45
HIST1H1AQ02539 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC17.84■□□□□ 0.45
HIST1H1AQ02539 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HIST1H1AQ02539 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
HIST1H1AQ02539 PREB-202ENST00000406567 1910 ntTSL 5 BASIC17.84■□□□□ 0.45
HIST1H1AQ02539 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC17.84■□□□□ 0.45
HIST1H1AQ02539 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
HIST1H1AQ02539 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HIST1H1AQ02539 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HIST1H1AQ02539 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
HIST1H1AQ02539 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
HIST1H1AQ02539 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
HIST1H1AQ02539 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
HIST1H1AQ02539 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
HIST1H1AQ02539 MBP-237ENST00000579129 1052 ntTSL 5 BASIC17.83■□□□□ 0.44
HIST1H1AQ02539 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
HIST1H1AQ02539 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
HIST1H1AQ02539 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
HIST1H1AQ02539 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HIST1H1AQ02539 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
HIST1H1AQ02539 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HIST1H1AQ02539 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HIST1H1AQ02539 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
HIST1H1AQ02539 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HIST1H1AQ02539 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC17.82■□□□□ 0.44
HIST1H1AQ02539 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC17.82■□□□□ 0.44
HIST1H1AQ02539 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HIST1H1AQ02539 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HIST1H1AQ02539 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HIST1H1AQ02539 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
HIST1H1AQ02539 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HIST1H1AQ02539 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
HIST1H1AQ02539 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HIST1H1AQ02539 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC17.81■□□□□ 0.44
HIST1H1AQ02539 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HIST1H1AQ02539 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HIST1H1AQ02539 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
HIST1H1AQ02539 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC17.81■□□□□ 0.44
HIST1H1AQ02539 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
HIST1H1AQ02539 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HIST1H1AQ02539 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
HIST1H1AQ02539 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
HIST1H1AQ02539 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HIST1H1AQ02539 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC17.8■□□□□ 0.44
HIST1H1AQ02539 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC17.8■□□□□ 0.44
HIST1H1AQ02539 RP9P-202ENST00000450133 1212 ntBASIC17.8■□□□□ 0.44
HIST1H1AQ02539 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms