Protein–RNA interactions for Protein: P35625

TIMP3, Metalloproteinase inhibitor 3, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP3P35625 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
TIMP3P35625 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TIMP3P35625 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TIMP3P35625 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TIMP3P35625 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC20.96■□□□□ 0.95
TIMP3P35625 TSPY9P-201ENST00000440215 945 ntBASIC20.96■□□□□ 0.95
TIMP3P35625 TSPY11P-201ENST00000442607 1045 ntBASIC20.96■□□□□ 0.95
TIMP3P35625 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.96■□□□□ 0.95
TIMP3P35625 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.96■□□□□ 0.95
TIMP3P35625 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
TIMP3P35625 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.96■□□□□ 0.95
TIMP3P35625 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TIMP3P35625 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TIMP3P35625 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TIMP3P35625 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.95■□□□□ 0.94
TIMP3P35625 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.95■□□□□ 0.94
TIMP3P35625 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC20.95■□□□□ 0.94
TIMP3P35625 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
TIMP3P35625 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TIMP3P35625 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TIMP3P35625 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TIMP3P35625 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
TIMP3P35625 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TIMP3P35625 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TIMP3P35625 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
TIMP3P35625 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TIMP3P35625 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TIMP3P35625 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.93■□□□□ 0.94
TIMP3P35625 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
TIMP3P35625 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.93■□□□□ 0.94
TIMP3P35625 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC20.93■□□□□ 0.94
TIMP3P35625 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.93■□□□□ 0.94
TIMP3P35625 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC20.93■□□□□ 0.94
TIMP3P35625 AC097639.1-201ENST00000565519 1891 ntBASIC20.92■□□□□ 0.94
TIMP3P35625 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TIMP3P35625 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TIMP3P35625 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC20.92■□□□□ 0.94
TIMP3P35625 AC008406.3-201ENST00000620001 1374 ntBASIC20.92■□□□□ 0.94
TIMP3P35625 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TIMP3P35625 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TIMP3P35625 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TIMP3P35625 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TIMP3P35625 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
TIMP3P35625 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.91■□□□□ 0.94
TIMP3P35625 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
TIMP3P35625 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.91■□□□□ 0.94
TIMP3P35625 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.91■□□□□ 0.94
TIMP3P35625 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TIMP3P35625 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TIMP3P35625 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC20.91■□□□□ 0.94
TIMP3P35625 PKM-203ENST00000389093 2279 ntTSL 5 BASIC20.9■□□□□ 0.94
TIMP3P35625 AC096887.2-201ENST00000623443 1957 ntBASIC20.9■□□□□ 0.94
TIMP3P35625 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TIMP3P35625 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
TIMP3P35625 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TIMP3P35625 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC20.9■□□□□ 0.94
TIMP3P35625 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.9■□□□□ 0.94
TIMP3P35625 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC20.9■□□□□ 0.94
TIMP3P35625 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TIMP3P35625 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.89■□□□□ 0.94
TIMP3P35625 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.89■□□□□ 0.93
TIMP3P35625 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC20.89■□□□□ 0.93
TIMP3P35625 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TIMP3P35625 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
TIMP3P35625 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TIMP3P35625 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TIMP3P35625 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TIMP3P35625 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC20.88■□□□□ 0.93
TIMP3P35625 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TIMP3P35625 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TIMP3P35625 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TIMP3P35625 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TIMP3P35625 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
TIMP3P35625 ERN1-208ENST00000606895 2068 ntBASIC20.88■□□□□ 0.93
TIMP3P35625 AC010501.1-201ENST00000606270 1962 ntBASIC20.88■□□□□ 0.93
TIMP3P35625 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TIMP3P35625 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC20.88■□□□□ 0.93
TIMP3P35625 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC20.87■□□□□ 0.93
TIMP3P35625 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TIMP3P35625 SENP5-202ENST00000419026 973 ntTSL 3 BASIC20.87■□□□□ 0.93
TIMP3P35625 AC010997.5-201ENST00000609182 354 ntBASIC20.87■□□□□ 0.93
TIMP3P35625 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC20.87■□□□□ 0.93
TIMP3P35625 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TIMP3P35625 AC090877.2-201ENST00000558441 1738 ntBASIC20.87■□□□□ 0.93
TIMP3P35625 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TIMP3P35625 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC20.86■□□□□ 0.93
TIMP3P35625 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC20.86■□□□□ 0.93
TIMP3P35625 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC20.86■□□□□ 0.93
TIMP3P35625 MTDHP2-201ENST00000601468 714 ntBASIC20.86■□□□□ 0.93
TIMP3P35625 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.86■□□□□ 0.93
TIMP3P35625 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TIMP3P35625 AF131216.4-201ENST00000638924 1588 ntBASIC20.85■□□□□ 0.93
TIMP3P35625 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
TIMP3P35625 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TIMP3P35625 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC20.85■□□□□ 0.93
TIMP3P35625 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TIMP3P35625 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TIMP3P35625 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
TIMP3P35625 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
TIMP3P35625 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 116.5 ms