Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC22.57■■□□□ 1.2
SEMA3DO95025 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
SEMA3DO95025 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
SEMA3DO95025 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SEMA3DO95025 AC138932.3-201ENST00000567634 1902 ntBASIC22.57■■□□□ 1.2
SEMA3DO95025 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SEMA3DO95025 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SEMA3DO95025 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
SEMA3DO95025 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SEMA3DO95025 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC22.56■■□□□ 1.2
SEMA3DO95025 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SEMA3DO95025 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
SEMA3DO95025 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
SEMA3DO95025 IDNK-203ENST00000405990 629 ntTSL 2 BASIC22.55■■□□□ 1.2
SEMA3DO95025 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
SEMA3DO95025 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC22.55■■□□□ 1.2
SEMA3DO95025 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SEMA3DO95025 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC22.55■■□□□ 1.2
SEMA3DO95025 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SEMA3DO95025 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
SEMA3DO95025 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
SEMA3DO95025 RPS2P7-201ENST00000447334 885 ntBASIC22.54■■□□□ 1.2
SEMA3DO95025 MIR6765-201ENST00000614092 87 ntBASIC22.54■■□□□ 1.2
SEMA3DO95025 AP003733.4-201ENST00000623785 1697 ntBASIC22.54■■□□□ 1.2
SEMA3DO95025 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC22.54■■□□□ 1.2
SEMA3DO95025 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SEMA3DO95025 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SEMA3DO95025 DUX4L9-201ENST00000449051 1259 ntBASIC22.53■■□□□ 1.2
SEMA3DO95025 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
SEMA3DO95025 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
SEMA3DO95025 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SEMA3DO95025 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
SEMA3DO95025 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC22.52■■□□□ 1.2
SEMA3DO95025 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
SEMA3DO95025 MIR6089-201ENST00000616698 64 ntBASIC22.52■■□□□ 1.2
SEMA3DO95025 AC129492.7-201ENST00000622992 756 ntBASIC22.52■■□□□ 1.2
SEMA3DO95025 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC22.52■■□□□ 1.2
SEMA3DO95025 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SEMA3DO95025 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC22.51■■□□□ 1.19
SEMA3DO95025 KRT18P60-201ENST00000312876 1297 ntBASIC22.51■■□□□ 1.19
SEMA3DO95025 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC22.51■■□□□ 1.19
SEMA3DO95025 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SEMA3DO95025 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SEMA3DO95025 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
SEMA3DO95025 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
SEMA3DO95025 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC22.5■■□□□ 1.19
SEMA3DO95025 AC087393.1-201ENST00000582896 145 ntBASIC22.5■■□□□ 1.19
SEMA3DO95025 NTF6A-201ENST00000591175 560 ntBASIC22.5■■□□□ 1.19
SEMA3DO95025 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC22.5■■□□□ 1.19
SEMA3DO95025 FOXO3B-201ENST00000395675 1928 ntBASIC22.5■■□□□ 1.19
SEMA3DO95025 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC22.5■■□□□ 1.19
SEMA3DO95025 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC22.49■■□□□ 1.19
SEMA3DO95025 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC22.49■■□□□ 1.19
SEMA3DO95025 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
SEMA3DO95025 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC22.49■■□□□ 1.19
SEMA3DO95025 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
SEMA3DO95025 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
SEMA3DO95025 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
SEMA3DO95025 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
SEMA3DO95025 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
SEMA3DO95025 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC22.48■■□□□ 1.19
SEMA3DO95025 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
SEMA3DO95025 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC22.48■■□□□ 1.19
SEMA3DO95025 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
SEMA3DO95025 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
SEMA3DO95025 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC22.47■■□□□ 1.19
SEMA3DO95025 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
SEMA3DO95025 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
SEMA3DO95025 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC22.47■■□□□ 1.19
SEMA3DO95025 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
SEMA3DO95025 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC22.47■■□□□ 1.19
SEMA3DO95025 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC22.47■■□□□ 1.19
SEMA3DO95025 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
SEMA3DO95025 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
SEMA3DO95025 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
SEMA3DO95025 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC22.46■■□□□ 1.19
SEMA3DO95025 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC22.46■■□□□ 1.19
SEMA3DO95025 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
SEMA3DO95025 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
SEMA3DO95025 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
SEMA3DO95025 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
SEMA3DO95025 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC22.46■■□□□ 1.19
SEMA3DO95025 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC22.46■■□□□ 1.19
SEMA3DO95025 EED-207ENST00000528180 1745 ntTSL 5 BASIC22.45■■□□□ 1.19
SEMA3DO95025 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
SEMA3DO95025 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SEMA3DO95025 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC22.45■■□□□ 1.18
SEMA3DO95025 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SEMA3DO95025 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
SEMA3DO95025 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
SEMA3DO95025 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC22.45■■□□□ 1.18
SEMA3DO95025 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SEMA3DO95025 LTK-203ENST00000453182 2412 ntTSL 2 BASIC22.45■■□□□ 1.18
SEMA3DO95025 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
SEMA3DO95025 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC22.43■■□□□ 1.18
SEMA3DO95025 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
SEMA3DO95025 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
SEMA3DO95025 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
SEMA3DO95025 AL139125.2-201ENST00000623134 1869 ntBASIC22.43■■□□□ 1.18
SEMA3DO95025 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 12.8 ms