Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC18.59■□□□□ 0.57
TRAV41A0A0B4J266 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
TRAV41A0A0B4J266 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC18.59■□□□□ 0.57
TRAV41A0A0B4J266 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC18.58■□□□□ 0.57
TRAV41A0A0B4J266 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.57
TRAV41A0A0B4J266 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
TRAV41A0A0B4J266 AL592295.1-201ENST00000400984 884 ntBASIC18.58■□□□□ 0.56
TRAV41A0A0B4J266 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC18.58■□□□□ 0.56
TRAV41A0A0B4J266 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
TRAV41A0A0B4J266 PVT1_1.1-201ENST00000615125 194 ntBASIC18.58■□□□□ 0.56
TRAV41A0A0B4J266 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
TRAV41A0A0B4J266 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC18.57■□□□□ 0.56
TRAV41A0A0B4J266 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC18.57■□□□□ 0.56
TRAV41A0A0B4J266 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRAV41A0A0B4J266 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC18.57■□□□□ 0.56
TRAV41A0A0B4J266 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TRAV41A0A0B4J266 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRAV41A0A0B4J266 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TRAV41A0A0B4J266 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRAV41A0A0B4J266 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRAV41A0A0B4J266 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRAV41A0A0B4J266 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRAV41A0A0B4J266 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TRAV41A0A0B4J266 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRAV41A0A0B4J266 AC022616.5-201ENST00000518796 181 ntBASIC18.56■□□□□ 0.56
TRAV41A0A0B4J266 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRAV41A0A0B4J266 KRT8P33-201ENST00000508125 1423 ntBASIC18.56■□□□□ 0.56
TRAV41A0A0B4J266 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC18.56■□□□□ 0.56
TRAV41A0A0B4J266 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC18.56■□□□□ 0.56
TRAV41A0A0B4J266 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRAV41A0A0B4J266 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRAV41A0A0B4J266 YBX1P4-201ENST00000392794 808 ntBASIC18.55■□□□□ 0.56
TRAV41A0A0B4J266 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC18.55■□□□□ 0.56
TRAV41A0A0B4J266 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
TRAV41A0A0B4J266 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRAV41A0A0B4J266 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRAV41A0A0B4J266 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRAV41A0A0B4J266 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRAV41A0A0B4J266 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
TRAV41A0A0B4J266 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC18.54■□□□□ 0.56
TRAV41A0A0B4J266 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRAV41A0A0B4J266 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRAV41A0A0B4J266 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRAV41A0A0B4J266 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRAV41A0A0B4J266 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRAV41A0A0B4J266 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRAV41A0A0B4J266 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRAV41A0A0B4J266 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRAV41A0A0B4J266 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
TRAV41A0A0B4J266 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRAV41A0A0B4J266 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC18.53■□□□□ 0.56
TRAV41A0A0B4J266 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
TRAV41A0A0B4J266 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC18.53■□□□□ 0.56
TRAV41A0A0B4J266 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC18.53■□□□□ 0.56
TRAV41A0A0B4J266 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRAV41A0A0B4J266 SLC6A10P-202ENST00000431994 2058 ntBASIC18.53■□□□□ 0.56
TRAV41A0A0B4J266 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TRAV41A0A0B4J266 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRAV41A0A0B4J266 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRAV41A0A0B4J266 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRAV41A0A0B4J266 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
TRAV41A0A0B4J266 MIR4508-201ENST00000584178 70 ntBASIC18.52■□□□□ 0.56
TRAV41A0A0B4J266 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
TRAV41A0A0B4J266 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
TRAV41A0A0B4J266 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
TRAV41A0A0B4J266 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRAV41A0A0B4J266 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRAV41A0A0B4J266 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
TRAV41A0A0B4J266 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC18.51■□□□□ 0.55
TRAV41A0A0B4J266 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC18.51■□□□□ 0.55
TRAV41A0A0B4J266 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRAV41A0A0B4J266 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TRAV41A0A0B4J266 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRAV41A0A0B4J266 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRAV41A0A0B4J266 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRAV41A0A0B4J266 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
TRAV41A0A0B4J266 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRAV41A0A0B4J266 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
TRAV41A0A0B4J266 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRAV41A0A0B4J266 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
TRAV41A0A0B4J266 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TRAV41A0A0B4J266 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRAV41A0A0B4J266 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV41A0A0B4J266 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV41A0A0B4J266 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV41A0A0B4J266 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC18.49■□□□□ 0.55
TRAV41A0A0B4J266 AC103834.1-201ENST00000520383 144 ntBASIC18.49■□□□□ 0.55
TRAV41A0A0B4J266 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV41A0A0B4J266 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC18.49■□□□□ 0.55
TRAV41A0A0B4J266 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV41A0A0B4J266 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC18.49■□□□□ 0.55
TRAV41A0A0B4J266 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
TRAV41A0A0B4J266 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV41A0A0B4J266 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC18.49■□□□□ 0.55
TRAV41A0A0B4J266 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
TRAV41A0A0B4J266 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
TRAV41A0A0B4J266 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV41A0A0B4J266 SSSCA1-AS1-201ENST00000567594 614 ntBASIC18.48■□□□□ 0.55
TRAV41A0A0B4J266 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC18.48■□□□□ 0.55
TRAV41A0A0B4J266 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms