Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC15.8■□□□□ 0.12
VPS4AQ9UN37 AL512652.2-201ENST00000625156 1716 ntBASIC15.8■□□□□ 0.12
VPS4AQ9UN37 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 STOM-202ENST00000347359 870 ntTSL 2 BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 INO80C-206ENST00000586489 594 ntTSL 3 BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 REXO1L3P-201ENST00000622202 1288 ntBASIC15.79■□□□□ 0.12
VPS4AQ9UN37 AC010507.1-201ENST00000633895 436 ntBASIC15.79■□□□□ 0.12
VPS4AQ9UN37 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 AC131009.4-201ENST00000624048 1740 ntBASIC15.79■□□□□ 0.12
VPS4AQ9UN37 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
VPS4AQ9UN37 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 PC-214ENST00000628663 1470 ntTSL 5 BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 HARS-204ENST00000438307 1789 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 PUDP-206ENST00000540122 825 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 DUT-210ENST00000559935 569 ntTSL 3 BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 AC023141.13-201ENST00000604991 943 ntBASIC15.78■□□□□ 0.12
VPS4AQ9UN37 GGTLC5P-201ENST00000617623 998 ntBASIC15.78■□□□□ 0.12
VPS4AQ9UN37 CITED2-204ENST00000618718 901 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 AC091812.2-201ENST00000619081 385 ntBASIC15.78■□□□□ 0.12
VPS4AQ9UN37 AL035252.4-201ENST00000624174 288 ntBASIC15.78■□□□□ 0.12
VPS4AQ9UN37 AL805961.1-202ENST00000641562 540 ntBASIC15.78■□□□□ 0.12
VPS4AQ9UN37 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 AL031731.1-201ENST00000642131 2094 ntBASIC15.78■□□□□ 0.12
VPS4AQ9UN37 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS4AQ9UN37 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
VPS4AQ9UN37 AC025580.3-201ENST00000617932 1424 ntBASIC15.77■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms