Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 AC023157.3-201ENST00000619086 2088 ntBASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 PC-214ENST00000628663 1470 ntTSL 5 BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 WDR53-204ENST00000433160 887 ntTSL 5 BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 PRSS29P-201ENST00000440800 595 ntBASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 MIR4751-201ENST00000578027 74 ntBASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 SLC25A6P4-201ENST00000586535 553 ntBASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
CCDC39Q9UFE4 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 SP100-205ENST00000409824 1802 ntTSL 5 BASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 CDK2AP2P3-201ENST00000422476 372 ntBASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 OR7E47P-204ENST00000575924 449 ntBASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 WT1-AS_2.1-201ENST00000613208 137 ntBASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
CCDC39Q9UFE4 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC39Q9UFE4 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC39Q9UFE4 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
CCDC39Q9UFE4 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC39Q9UFE4 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC39Q9UFE4 AL671710.1-201ENST00000610245 2349 ntBASIC18.83■□□□□ 0.61
CCDC39Q9UFE4 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC18.83■□□□□ 0.61
CCDC39Q9UFE4 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC18.83■□□□□ 0.61
CCDC39Q9UFE4 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC39Q9UFE4 CSF3-203ENST00000394148 622 ntTSL 3 BASIC18.83■□□□□ 0.6
CCDC39Q9UFE4 STARD13-205ENST00000439831 945 ntTSL 2 BASIC18.83■□□□□ 0.6
CCDC39Q9UFE4 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC39Q9UFE4 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC18.83■□□□□ 0.6
CCDC39Q9UFE4 RNA5SP419-201ENST00000515908 135 ntBASIC18.83■□□□□ 0.6
CCDC39Q9UFE4 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.83■□□□□ 0.6
CCDC39Q9UFE4 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC18.83■□□□□ 0.6
CCDC39Q9UFE4 PENK-208ENST00000523051 772 ntTSL 5 BASIC18.83■□□□□ 0.6
CCDC39Q9UFE4 UNC93B6-202ENST00000528242 690 ntBASIC18.83■□□□□ 0.6
CCDC39Q9UFE4 MMP17-203ENST00000535004 719 ntTSL 3 BASIC18.83■□□□□ 0.6
CCDC39Q9UFE4 TCAP-202ENST00000578283 583 ntTSL 5 BASIC18.83■□□□□ 0.6
CCDC39Q9UFE4 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC18.83■□□□□ 0.6
CCDC39Q9UFE4 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms