Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS54Q9P1Q0 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS54Q9P1Q0 LINC02447-202ENST00000501888 2146 ntBASIC18.67■□□□□ 0.58
VPS54Q9P1Q0 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS54Q9P1Q0 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC18.67■□□□□ 0.58
VPS54Q9P1Q0 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS54Q9P1Q0 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
VPS54Q9P1Q0 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS54Q9P1Q0 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS54Q9P1Q0 AC069224.1-201ENST00000566372 1715 ntBASIC18.66■□□□□ 0.58
VPS54Q9P1Q0 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS54Q9P1Q0 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
VPS54Q9P1Q0 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS54Q9P1Q0 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC18.66■□□□□ 0.58
VPS54Q9P1Q0 TSEN15P1-201ENST00000423257 515 ntBASIC18.66■□□□□ 0.58
VPS54Q9P1Q0 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS54Q9P1Q0 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS54Q9P1Q0 LINC00628-201ENST00000628516 1289 ntBASIC18.66■□□□□ 0.58
VPS54Q9P1Q0 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS54Q9P1Q0 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS54Q9P1Q0 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS54Q9P1Q0 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS54Q9P1Q0 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS54Q9P1Q0 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS54Q9P1Q0 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC18.66■□□□□ 0.58
VPS54Q9P1Q0 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS54Q9P1Q0 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS54Q9P1Q0 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS54Q9P1Q0 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS54Q9P1Q0 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 RPL30-202ENST00000396070 440 ntTSL 2 BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 HAUS4P1-201ENST00000406739 1145 ntBASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 URGCP-206ENST00000446958 365 ntTSL 2 BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 AC245100.5-201ENST00000452108 331 ntBASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 GPALPP1-207ENST00000611650 899 ntBASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS54Q9P1Q0 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC18.64■□□□□ 0.58
VPS54Q9P1Q0 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.58
VPS54Q9P1Q0 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
VPS54Q9P1Q0 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS54Q9P1Q0 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS54Q9P1Q0 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
VPS54Q9P1Q0 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC18.64■□□□□ 0.57
VPS54Q9P1Q0 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS54Q9P1Q0 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS54Q9P1Q0 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS54Q9P1Q0 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS54Q9P1Q0 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS54Q9P1Q0 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS54Q9P1Q0 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC18.64■□□□□ 0.57
VPS54Q9P1Q0 HLA-J-203ENST00000494367 1087 ntBASIC18.64■□□□□ 0.57
VPS54Q9P1Q0 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VPS54Q9P1Q0 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VPS54Q9P1Q0 MAX-210ENST00000555419 765 ntTSL 5 BASIC18.64■□□□□ 0.57
VPS54Q9P1Q0 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS54Q9P1Q0 AC018529.1-201ENST00000613063 361 ntBASIC18.64■□□□□ 0.57
VPS54Q9P1Q0 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VPS54Q9P1Q0 AP001059.3-201ENST00000619053 235 ntBASIC18.64■□□□□ 0.57
VPS54Q9P1Q0 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS54Q9P1Q0 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS54Q9P1Q0 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS54Q9P1Q0 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS54Q9P1Q0 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS54Q9P1Q0 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms