Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
IFT140Q96RY7 AP001282.1-201ENST00000531301 1499 ntBASIC26.2■■□□□ 1.79
IFT140Q96RY7 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
IFT140Q96RY7 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC26.2■■□□□ 1.79
IFT140Q96RY7 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC26.2■■□□□ 1.79
IFT140Q96RY7 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC26.2■■□□□ 1.78
IFT140Q96RY7 POU5F1P6-201ENST00000466990 990 ntBASIC26.2■■□□□ 1.78
IFT140Q96RY7 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC26.2■■□□□ 1.78
IFT140Q96RY7 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC26.2■■□□□ 1.78
IFT140Q96RY7 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC26.2■■□□□ 1.78
IFT140Q96RY7 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC26.2■■□□□ 1.78
IFT140Q96RY7 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
IFT140Q96RY7 GATB-213ENST00000515812 1893 ntTSL 5 BASIC26.2■■□□□ 1.78
IFT140Q96RY7 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
IFT140Q96RY7 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC26.2■■□□□ 1.78
IFT140Q96RY7 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC26.2■■□□□ 1.78
IFT140Q96RY7 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
IFT140Q96RY7 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
IFT140Q96RY7 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
IFT140Q96RY7 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC26.19■■□□□ 1.78
IFT140Q96RY7 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
IFT140Q96RY7 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC26.19■■□□□ 1.78
IFT140Q96RY7 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC26.19■■□□□ 1.78
IFT140Q96RY7 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
IFT140Q96RY7 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
IFT140Q96RY7 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC26.19■■□□□ 1.78
IFT140Q96RY7 AL627389.1-201ENST00000413508 1182 ntBASIC26.19■■□□□ 1.78
IFT140Q96RY7 NCK2-206ENST00000522586 490 ntTSL 5 BASIC26.19■■□□□ 1.78
IFT140Q96RY7 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC26.19■■□□□ 1.78
IFT140Q96RY7 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC26.19■■□□□ 1.78
IFT140Q96RY7 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
IFT140Q96RY7 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
IFT140Q96RY7 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC26.19■■□□□ 1.78
IFT140Q96RY7 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
IFT140Q96RY7 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC26.19■■□□□ 1.78
IFT140Q96RY7 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
IFT140Q96RY7 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
IFT140Q96RY7 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC26.19■■□□□ 1.78
IFT140Q96RY7 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
IFT140Q96RY7 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC26.18■■□□□ 1.78
IFT140Q96RY7 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
IFT140Q96RY7 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC26.18■■□□□ 1.78
IFT140Q96RY7 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
IFT140Q96RY7 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC26.18■■□□□ 1.78
IFT140Q96RY7 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
IFT140Q96RY7 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
IFT140Q96RY7 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC26.18■■□□□ 1.78
IFT140Q96RY7 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC26.18■■□□□ 1.78
IFT140Q96RY7 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
IFT140Q96RY7 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
IFT140Q96RY7 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC26.18■■□□□ 1.78
IFT140Q96RY7 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC26.18■■□□□ 1.78
IFT140Q96RY7 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
IFT140Q96RY7 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC26.18■■□□□ 1.78
IFT140Q96RY7 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC26.18■■□□□ 1.78
IFT140Q96RY7 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
IFT140Q96RY7 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC26.17■■□□□ 1.78
IFT140Q96RY7 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
IFT140Q96RY7 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
IFT140Q96RY7 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
IFT140Q96RY7 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC26.17■■□□□ 1.78
IFT140Q96RY7 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC26.17■■□□□ 1.78
IFT140Q96RY7 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC26.17■■□□□ 1.78
IFT140Q96RY7 KLF2P2-201ENST00000416807 1039 ntBASIC26.17■■□□□ 1.78
IFT140Q96RY7 AL354877.1-201ENST00000424412 413 ntBASIC26.17■■□□□ 1.78
IFT140Q96RY7 AC234782.1-201ENST00000451950 919 ntBASIC26.17■■□□□ 1.78
IFT140Q96RY7 KRT18P66-201ENST00000452970 1269 ntBASIC26.17■■□□□ 1.78
IFT140Q96RY7 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC26.17■■□□□ 1.78
IFT140Q96RY7 AL161670.2-201ENST00000557650 1227 ntBASIC26.17■■□□□ 1.78
IFT140Q96RY7 NPM1P43-201ENST00000558669 786 ntBASIC26.17■■□□□ 1.78
IFT140Q96RY7 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC26.17■■□□□ 1.78
IFT140Q96RY7 MIR3147-201ENST00000577811 66 ntBASIC26.17■■□□□ 1.78
IFT140Q96RY7 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
IFT140Q96RY7 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC26.17■■□□□ 1.78
IFT140Q96RY7 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
IFT140Q96RY7 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC26.17■■□□□ 1.78
IFT140Q96RY7 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC26.17■■□□□ 1.78
IFT140Q96RY7 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC26.17■■□□□ 1.78
IFT140Q96RY7 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
IFT140Q96RY7 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC26.17■■□□□ 1.78
IFT140Q96RY7 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC26.17■■□□□ 1.78
IFT140Q96RY7 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC26.17■■□□□ 1.78
IFT140Q96RY7 AC009053.2-201ENST00000563701 2365 ntBASIC26.17■■□□□ 1.78
IFT140Q96RY7 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC26.17■■□□□ 1.78
IFT140Q96RY7 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC26.17■■□□□ 1.78
IFT140Q96RY7 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC26.17■■□□□ 1.78
IFT140Q96RY7 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC26.17■■□□□ 1.78
IFT140Q96RY7 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC26.17■■□□□ 1.78
IFT140Q96RY7 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC26.17■■□□□ 1.78
IFT140Q96RY7 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC26.17■■□□□ 1.78
IFT140Q96RY7 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC26.17■■□□□ 1.78
IFT140Q96RY7 AC022748.3-201ENST00000621828 275 ntBASIC26.17■■□□□ 1.78
IFT140Q96RY7 BX539320.1-201ENST00000623759 877 ntBASIC26.17■■□□□ 1.78
IFT140Q96RY7 AC100757.4-201ENST00000626934 759 ntBASIC26.17■■□□□ 1.78
IFT140Q96RY7 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
IFT140Q96RY7 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
IFT140Q96RY7 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC26.16■■□□□ 1.78
IFT140Q96RY7 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC26.16■■□□□ 1.78
IFT140Q96RY7 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
IFT140Q96RY7 REXO1L1P-202ENST00000608646 1974 ntBASIC26.16■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms