Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC42Q96M95 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC17.55■□□□□ 0.4
CCDC42Q96M95 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
CCDC42Q96M95 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC42Q96M95 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
CCDC42Q96M95 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC42Q96M95 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC42Q96M95 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC42Q96M95 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC42Q96M95 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
CCDC42Q96M95 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC42Q96M95 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
CCDC42Q96M95 HMGA1P7-201ENST00000406908 502 ntBASIC17.55■□□□□ 0.4
CCDC42Q96M95 PMS2P4-201ENST00000412466 1052 ntBASIC17.55■□□□□ 0.4
CCDC42Q96M95 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17.55■□□□□ 0.4
CCDC42Q96M95 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC17.55■□□□□ 0.4
CCDC42Q96M95 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC17.55■□□□□ 0.4
CCDC42Q96M95 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC42Q96M95 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC42Q96M95 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC42Q96M95 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC42Q96M95 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC42Q96M95 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
CCDC42Q96M95 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC42Q96M95 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
CCDC42Q96M95 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC42Q96M95 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC42Q96M95 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC42Q96M95 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC42Q96M95 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC42Q96M95 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC42Q96M95 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC42Q96M95 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
CCDC42Q96M95 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC42Q96M95 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC42Q96M95 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC42Q96M95 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC42Q96M95 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC42Q96M95 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC42Q96M95 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC42Q96M95 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC42Q96M95 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC42Q96M95 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC42Q96M95 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC42Q96M95 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC42Q96M95 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC42Q96M95 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CCDC42Q96M95 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CCDC42Q96M95 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC42Q96M95 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC42Q96M95 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC42Q96M95 AC108073.2-201ENST00000464002 357 ntBASIC17.54■□□□□ 0.4
CCDC42Q96M95 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC42Q96M95 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC42Q96M95 MIR3909-201ENST00000579518 119 ntBASIC17.54■□□□□ 0.4
CCDC42Q96M95 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC17.54■□□□□ 0.4
CCDC42Q96M95 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC42Q96M95 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC42Q96M95 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC42Q96M95 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC42Q96M95 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC17.54■□□□□ 0.4
CCDC42Q96M95 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC42Q96M95 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC42Q96M95 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC17.54■□□□□ 0.4
CCDC42Q96M95 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CCDC42Q96M95 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC42Q96M95 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CCDC42Q96M95 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC42Q96M95 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC42Q96M95 SSR4P1-203ENST00000599569 2260 ntBASIC17.54■□□□□ 0.4
CCDC42Q96M95 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC42Q96M95 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC42Q96M95 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC42Q96M95 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC42Q96M95 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC42Q96M95 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC42Q96M95 RELA-227ENST00000615805 2236 ntTSL 5 BASIC17.53■□□□□ 0.4
CCDC42Q96M95 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC42Q96M95 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC42Q96M95 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC42Q96M95 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC42Q96M95 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC42Q96M95 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC42Q96M95 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CCDC42Q96M95 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CCDC42Q96M95 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC42Q96M95 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC42Q96M95 AP002414.3-201ENST00000589352 1468 ntBASIC17.53■□□□□ 0.4
CCDC42Q96M95 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC17.53■□□□□ 0.4
CCDC42Q96M95 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC42Q96M95 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC42Q96M95 HAUS4P1-201ENST00000406739 1145 ntBASIC17.53■□□□□ 0.4
CCDC42Q96M95 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
CCDC42Q96M95 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
CCDC42Q96M95 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC42Q96M95 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC42Q96M95 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC17.53■□□□□ 0.4
CCDC42Q96M95 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC42Q96M95 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC42Q96M95 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms