Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 TUBGCP2-210ENST00000543663 4302 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 AC092068.3-201ENST00000587894 2016 ntBASIC5.05□□□□□ -1.6
SYNE1Q8NF91 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 MYCLP1-201ENST00000372451 1075 ntBASIC5.05□□□□□ -1.6
SYNE1Q8NF91 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 CRB3P1-201ENST00000449338 276 ntBASIC5.05□□□□□ -1.6
SYNE1Q8NF91 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 AL031055.1-201ENST00000606362 631 ntBASIC5.05□□□□□ -1.6
SYNE1Q8NF91 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 RNA5SP421-201ENST00000516864 134 ntBASIC5.05□□□□□ -1.6
SYNE1Q8NF91 TP53TG3HP-202ENST00000569755 579 ntBASIC5.05□□□□□ -1.6
SYNE1Q8NF91 GOPC-202ENST00000368498 4450 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 COX5BP8-201ENST00000416911 349 ntBASIC5.05□□□□□ -1.6
SYNE1Q8NF91 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 DUX4L17-201ENST00000557360 1267 ntBASIC5.05□□□□□ -1.6
SYNE1Q8NF91 AC027307.2-201ENST00000591252 911 ntBASIC5.05□□□□□ -1.6
SYNE1Q8NF91 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 AC008764.6-201ENST00000595909 2069 ntBASIC5.05□□□□□ -1.6
SYNE1Q8NF91 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 HCG4-201ENST00000418983 998 ntBASIC5.05□□□□□ -1.6
SYNE1Q8NF91 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 AC106886.1-201ENST00000568660 600 ntBASIC5.05□□□□□ -1.6
SYNE1Q8NF91 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 PTPRN2-203ENST00000389418 4706 ntAPPRIS P4 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 ARHGAP45-210ENST00000590214 4191 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 FRMD8P1-201ENST00000440433 1524 ntBASIC5.05□□□□□ -1.6
SYNE1Q8NF91 ADAMTSL2-201ENST00000354484 4068 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC5.05□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms