Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.07■□□□□ 0.64
SMC1BQ8NDV3 AC015818.8-201ENST00000587907 1519 ntBASIC19.07■□□□□ 0.64
SMC1BQ8NDV3 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC19.07■□□□□ 0.64
SMC1BQ8NDV3 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
SMC1BQ8NDV3 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMC1BQ8NDV3 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SMC1BQ8NDV3 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SMC1BQ8NDV3 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
SMC1BQ8NDV3 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SMC1BQ8NDV3 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SMC1BQ8NDV3 AC104784.1-201ENST00000473096 294 ntBASIC19.07■□□□□ 0.64
SMC1BQ8NDV3 MIR3907-201ENST00000579424 151 ntBASIC19.07■□□□□ 0.64
SMC1BQ8NDV3 AP001505.2-201ENST00000616815 443 ntBASIC19.07■□□□□ 0.64
SMC1BQ8NDV3 AC005252.2-201ENST00000624630 1141 ntBASIC19.07■□□□□ 0.64
SMC1BQ8NDV3 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMC1BQ8NDV3 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMC1BQ8NDV3 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SMC1BQ8NDV3 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SMC1BQ8NDV3 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC19.07■□□□□ 0.64
SMC1BQ8NDV3 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMC1BQ8NDV3 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMC1BQ8NDV3 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
SMC1BQ8NDV3 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
SMC1BQ8NDV3 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMC1BQ8NDV3 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 CYP46A4P-201ENST00000414953 267 ntBASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 RPL13P2-201ENST00000440687 659 ntBASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 FXR1-221ENST00000491674 365 ntTSL 2 BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 IQSEC3P1-201ENST00000538799 536 ntBASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 AL451050.2-201ENST00000606967 682 ntBASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
SMC1BQ8NDV3 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 AC025279.2-201ENST00000569730 653 ntBASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 NKG7-204ENST00000595217 816 ntTSL 2 BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 SPIB-207ENST00000597855 564 ntTSL 4 BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 AC018635.2-201ENST00000608625 364 ntBASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 AL096828.3-201ENST00000615354 462 ntBASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 AC079336.7-201ENST00000623428 1078 ntBASIC19.05■□□□□ 0.64
SMC1BQ8NDV3 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms