Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CL1P78423 PGAM5P1-201ENST00000518923 814 ntBASIC13.14□□□□□ -0.31
CX3CL1P78423 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC13.14□□□□□ -0.31
CX3CL1P78423 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC13.14□□□□□ -0.31
CX3CL1P78423 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC13.14□□□□□ -0.31
CX3CL1P78423 AC002347.1-201ENST00000569543 541 ntBASIC13.14□□□□□ -0.31
CX3CL1P78423 AP002472.1-201ENST00000577490 586 ntBASIC13.14□□□□□ -0.31
CX3CL1P78423 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CL1P78423 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CL1P78423 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
CX3CL1P78423 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CL1P78423 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC13.14□□□□□ -0.31
CX3CL1P78423 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CL1P78423 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CL1P78423 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
CX3CL1P78423 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC13.14□□□□□ -0.31
CX3CL1P78423 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CL1P78423 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC13.14□□□□□ -0.31
CX3CL1P78423 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CL1P78423 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CL1P78423 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC13.14□□□□□ -0.31
CX3CL1P78423 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CL1P78423 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CL1P78423 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
CX3CL1P78423 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CL1P78423 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
CX3CL1P78423 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
CX3CL1P78423 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CL1P78423 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CL1P78423 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CL1P78423 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CL1P78423 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CL1P78423 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CL1P78423 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC13.13□□□□□ -0.31
CX3CL1P78423 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CL1P78423 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
CX3CL1P78423 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CL1P78423 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CL1P78423 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CL1P78423 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CL1P78423 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC13.13□□□□□ -0.31
CX3CL1P78423 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
CX3CL1P78423 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CL1P78423 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC13.13□□□□□ -0.31
CX3CL1P78423 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
CX3CL1P78423 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CL1P78423 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC13.13□□□□□ -0.31
CX3CL1P78423 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
CX3CL1P78423 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
CX3CL1P78423 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CL1P78423 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CL1P78423 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CL1P78423 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CL1P78423 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC13.13□□□□□ -0.31
CX3CL1P78423 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CL1P78423 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
CX3CL1P78423 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC13.13□□□□□ -0.31
CX3CL1P78423 AC002056.1-201ENST00000395613 760 ntBASIC13.13□□□□□ -0.31
CX3CL1P78423 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC13.13□□□□□ -0.31
CX3CL1P78423 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CL1P78423 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC13.13□□□□□ -0.31
CX3CL1P78423 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC13.13□□□□□ -0.31
CX3CL1P78423 AC112191.1-201ENST00000523689 701 ntBASIC13.13□□□□□ -0.31
CX3CL1P78423 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC13.13□□□□□ -0.31
CX3CL1P78423 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CL1P78423 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CL1P78423 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CL1P78423 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC13.13□□□□□ -0.31
CX3CL1P78423 AL671883.3-201ENST00000603274 991 ntBASIC13.13□□□□□ -0.31
CX3CL1P78423 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC13.13□□□□□ -0.31
CX3CL1P78423 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC13.13□□□□□ -0.31
CX3CL1P78423 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CL1P78423 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC13.13□□□□□ -0.31
CX3CL1P78423 AC126177.1-201ENST00000547829 2218 ntBASIC13.13□□□□□ -0.31
CX3CL1P78423 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC13.13□□□□□ -0.31
CX3CL1P78423 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CL1P78423 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CL1P78423 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CL1P78423 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC13.13□□□□□ -0.31
CX3CL1P78423 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CL1P78423 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CL1P78423 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CL1P78423 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC13.12□□□□□ -0.31
CX3CL1P78423 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CX3CL1P78423 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC13.12□□□□□ -0.31
CX3CL1P78423 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC13.12□□□□□ -0.31
CX3CL1P78423 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CX3CL1P78423 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CX3CL1P78423 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
CX3CL1P78423 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
CX3CL1P78423 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC13.12□□□□□ -0.31
CX3CL1P78423 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC13.12□□□□□ -0.31
CX3CL1P78423 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CX3CL1P78423 AC092364.2-201ENST00000596710 2692 ntBASIC13.12□□□□□ -0.31
CX3CL1P78423 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CX3CL1P78423 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CX3CL1P78423 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
CX3CL1P78423 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CX3CL1P78423 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CX3CL1P78423 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms