Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
TPM4P67936 SLC9A3P2-201ENST00000447821 2021 ntBASIC18.27■□□□□ 0.51
TPM4P67936 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TPM4P67936 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TPM4P67936 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
TPM4P67936 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TPM4P67936 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC18.26■□□□□ 0.51
TPM4P67936 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18.26■□□□□ 0.51
TPM4P67936 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
TPM4P67936 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
TPM4P67936 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC18.26■□□□□ 0.51
TPM4P67936 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TPM4P67936 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TPM4P67936 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TPM4P67936 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
TPM4P67936 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
TPM4P67936 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC18.26■□□□□ 0.51
TPM4P67936 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC18.26■□□□□ 0.51
TPM4P67936 MIR3180-1-201ENST00000580374 94 ntBASIC18.26■□□□□ 0.51
TPM4P67936 MIR3180-3-201ENST00000584616 94 ntBASIC18.26■□□□□ 0.51
TPM4P67936 AC138894.3-201ENST00000603787 634 ntBASIC18.26■□□□□ 0.51
TPM4P67936 WT1-AS_2.1-201ENST00000613208 137 ntBASIC18.26■□□□□ 0.51
TPM4P67936 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC18.26■□□□□ 0.51
TPM4P67936 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC18.26■□□□□ 0.51
TPM4P67936 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
TPM4P67936 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC18.26■□□□□ 0.51
TPM4P67936 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TPM4P67936 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
TPM4P67936 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
TPM4P67936 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TPM4P67936 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TPM4P67936 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
TPM4P67936 AP002414.2-201ENST00000591780 3365 ntBASIC18.25■□□□□ 0.51
TPM4P67936 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC18.25■□□□□ 0.51
TPM4P67936 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TPM4P67936 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
TPM4P67936 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
TPM4P67936 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TPM4P67936 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC18.25■□□□□ 0.51
TPM4P67936 AC092919.2-201ENST00000623631 1645 ntBASIC18.25■□□□□ 0.51
TPM4P67936 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
TPM4P67936 ARMC10P1-201ENST00000313754 855 ntBASIC18.25■□□□□ 0.51
TPM4P67936 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TPM4P67936 BET1L-202ENST00000332865 533 ntTSL 5 BASIC18.25■□□□□ 0.51
TPM4P67936 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TPM4P67936 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.25■□□□□ 0.51
TPM4P67936 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC18.25■□□□□ 0.51
TPM4P67936 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC18.25■□□□□ 0.51
TPM4P67936 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC18.25■□□□□ 0.51
TPM4P67936 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
TPM4P67936 BCL10-202ENST00000620248 774 ntTSL 5 BASIC18.25■□□□□ 0.51
TPM4P67936 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC18.25■□□□□ 0.51
TPM4P67936 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TPM4P67936 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
TPM4P67936 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TPM4P67936 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC18.25■□□□□ 0.51
TPM4P67936 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
TPM4P67936 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TPM4P67936 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TPM4P67936 PPT1-215ENST00000641471 2368 ntBASIC18.25■□□□□ 0.51
TPM4P67936 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
TPM4P67936 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TPM4P67936 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC18.25■□□□□ 0.51
TPM4P67936 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
TPM4P67936 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC18.25■□□□□ 0.51
TPM4P67936 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC18.25■□□□□ 0.51
TPM4P67936 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC18.25■□□□□ 0.51
TPM4P67936 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC18.25■□□□□ 0.51
TPM4P67936 AC129492.6-201ENST00000611383 1305 ntBASIC18.24■□□□□ 0.51
TPM4P67936 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC18.24■□□□□ 0.51
TPM4P67936 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC18.24■□□□□ 0.51
TPM4P67936 AC023157.3-201ENST00000619086 2088 ntBASIC18.24■□□□□ 0.51
TPM4P67936 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TPM4P67936 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC18.24■□□□□ 0.51
TPM4P67936 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
TPM4P67936 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
TPM4P67936 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TPM4P67936 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TPM4P67936 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TPM4P67936 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
TPM4P67936 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
TPM4P67936 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TPM4P67936 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC18.24■□□□□ 0.51
TPM4P67936 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC18.24■□□□□ 0.51
TPM4P67936 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TPM4P67936 LCK-206ENST00000373564 2137 ntTSL 5 BASIC18.24■□□□□ 0.51
TPM4P67936 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.24■□□□□ 0.51
TPM4P67936 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC18.24■□□□□ 0.51
TPM4P67936 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TPM4P67936 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC18.24■□□□□ 0.51
TPM4P67936 AL805961.1-202ENST00000641562 540 ntBASIC18.24■□□□□ 0.51
TPM4P67936 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
TPM4P67936 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TPM4P67936 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TPM4P67936 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TPM4P67936 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
TPM4P67936 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC18.24■□□□□ 0.51
TPM4P67936 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
TPM4P67936 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
TPM4P67936 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms