Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC15.99■□□□□ 0.15
CXCL12P48061 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC15.99■□□□□ 0.15
CXCL12P48061 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC15.99■□□□□ 0.15
CXCL12P48061 RIT1-205ENST00000539040 919 ntTSL 2 BASIC15.99■□□□□ 0.15
CXCL12P48061 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC15.99■□□□□ 0.15
CXCL12P48061 CLUHP6-201ENST00000580789 941 ntBASIC15.99■□□□□ 0.15
CXCL12P48061 AL049840.4-201ENST00000602422 811 ntBASIC15.99■□□□□ 0.15
CXCL12P48061 RETN-203ENST00000629642 400 ntTSL 5 BASIC15.99■□□□□ 0.15
CXCL12P48061 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CXCL12P48061 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CXCL12P48061 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC15.99■□□□□ 0.15
CXCL12P48061 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CXCL12P48061 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC15.99■□□□□ 0.15
CXCL12P48061 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
CXCL12P48061 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC15.99■□□□□ 0.15
CXCL12P48061 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CXCL12P48061 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
CXCL12P48061 AL603756.1-201ENST00000606511 2163 ntBASIC15.99■□□□□ 0.15
CXCL12P48061 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC15.99■□□□□ 0.15
CXCL12P48061 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC15.98■□□□□ 0.15
CXCL12P48061 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC15.98■□□□□ 0.15
CXCL12P48061 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CXCL12P48061 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CXCL12P48061 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
CXCL12P48061 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CXCL12P48061 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC15.98■□□□□ 0.15
CXCL12P48061 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CXCL12P48061 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CXCL12P48061 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CXCL12P48061 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CXCL12P48061 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
CXCL12P48061 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC15.98■□□□□ 0.15
CXCL12P48061 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CXCL12P48061 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CXCL12P48061 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CXCL12P48061 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC15.98■□□□□ 0.15
CXCL12P48061 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CXCL12P48061 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC15.98■□□□□ 0.15
CXCL12P48061 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
CXCL12P48061 AC026954.1-201ENST00000429771 1293 ntBASIC15.98■□□□□ 0.15
CXCL12P48061 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC15.98■□□□□ 0.15
CXCL12P48061 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC15.98■□□□□ 0.15
CXCL12P48061 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CXCL12P48061 AC093433.1-201ENST00000458048 571 ntBASIC15.98■□□□□ 0.15
CXCL12P48061 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CXCL12P48061 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
CXCL12P48061 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
CXCL12P48061 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC15.98■□□□□ 0.15
CXCL12P48061 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC15.98■□□□□ 0.15
CXCL12P48061 DUX4L45-201ENST00000566406 1057 ntBASIC15.98■□□□□ 0.15
CXCL12P48061 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC15.98■□□□□ 0.15
CXCL12P48061 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC15.98■□□□□ 0.15
CXCL12P48061 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC15.98■□□□□ 0.15
CXCL12P48061 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CXCL12P48061 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC15.98■□□□□ 0.15
CXCL12P48061 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CXCL12P48061 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC15.97■□□□□ 0.15
CXCL12P48061 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC15.97■□□□□ 0.15
CXCL12P48061 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CXCL12P48061 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CXCL12P48061 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC15.97■□□□□ 0.15
CXCL12P48061 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
CXCL12P48061 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC15.97■□□□□ 0.15
CXCL12P48061 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CXCL12P48061 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
CXCL12P48061 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CXCL12P48061 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
CXCL12P48061 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CXCL12P48061 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC15.97■□□□□ 0.15
CXCL12P48061 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CXCL12P48061 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CXCL12P48061 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CXCL12P48061 AGER-203ENST00000375065 665 ntTSL 2 BASIC15.97■□□□□ 0.15
CXCL12P48061 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
CXCL12P48061 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
CXCL12P48061 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CXCL12P48061 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC15.97■□□□□ 0.15
CXCL12P48061 C2orf27AP3-201ENST00000434123 579 ntBASIC15.97■□□□□ 0.15
CXCL12P48061 AC006033.1-201ENST00000440505 426 ntBASIC15.97■□□□□ 0.15
CXCL12P48061 USP40-206ENST00000443711 628 ntTSL 2 BASIC15.97■□□□□ 0.15
CXCL12P48061 VDAC1P7-201ENST00000462417 847 ntBASIC15.97■□□□□ 0.15
CXCL12P48061 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC15.97■□□□□ 0.15
CXCL12P48061 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC15.97■□□□□ 0.15
CXCL12P48061 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC15.97■□□□□ 0.15
CXCL12P48061 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15.97■□□□□ 0.15
CXCL12P48061 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC15.97■□□□□ 0.15
CXCL12P48061 ARL16-210ENST00000574938 751 ntTSL 2 BASIC15.97■□□□□ 0.15
CXCL12P48061 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC15.97■□□□□ 0.15
CXCL12P48061 AL118558.3-201ENST00000607414 1079 ntBASIC15.97■□□□□ 0.15
CXCL12P48061 AC244669.2-201ENST00000612320 853 ntBASIC15.97■□□□□ 0.15
CXCL12P48061 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
CXCL12P48061 METTL26-214ENST00000614890 801 ntTSL 3 BASIC15.97■□□□□ 0.15
CXCL12P48061 AL354718.3-201ENST00000616414 581 ntBASIC15.97■□□□□ 0.15
CXCL12P48061 CR382287.1-201ENST00000623954 586 ntBASIC15.97■□□□□ 0.15
CXCL12P48061 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC15.97■□□□□ 0.15
CXCL12P48061 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC15.97■□□□□ 0.15
CXCL12P48061 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CXCL12P48061 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CXCL12P48061 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC15.97■□□□□ 0.15
CXCL12P48061 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms