Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC14.88□□□□□ -0.03
MSX1P28360 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSX1P28360 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
MSX1P28360 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSX1P28360 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC14.88□□□□□ -0.03
MSX1P28360 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSX1P28360 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
MSX1P28360 VMA21-202ENST00000370361 693 ntTSL 5 BASIC14.88□□□□□ -0.03
MSX1P28360 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
MSX1P28360 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSX1P28360 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC14.88□□□□□ -0.03
MSX1P28360 MIR943-201ENST00000401286 94 ntBASIC14.88□□□□□ -0.03
MSX1P28360 FAM58DP-201ENST00000428076 619 ntBASIC14.88□□□□□ -0.03
MSX1P28360 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.88□□□□□ -0.03
MSX1P28360 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.88□□□□□ -0.03
MSX1P28360 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSX1P28360 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC14.88□□□□□ -0.03
MSX1P28360 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSX1P28360 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
MSX1P28360 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC14.88□□□□□ -0.03
MSX1P28360 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
MSX1P28360 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
MSX1P28360 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
MSX1P28360 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSX1P28360 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSX1P28360 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC14.88□□□□□ -0.03
MSX1P28360 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSX1P28360 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSX1P28360 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
MSX1P28360 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC14.88□□□□□ -0.03
MSX1P28360 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSX1P28360 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSX1P28360 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX1P28360 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX1P28360 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX1P28360 AC006449.6-201ENST00000612330 2296 ntBASIC14.87□□□□□ -0.03
MSX1P28360 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC14.87□□□□□ -0.03
MSX1P28360 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX1P28360 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC14.87□□□□□ -0.03
MSX1P28360 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX1P28360 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
MSX1P28360 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX1P28360 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX1P28360 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
MSX1P28360 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC14.87□□□□□ -0.03
MSX1P28360 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX1P28360 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX1P28360 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX1P28360 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC14.87□□□□□ -0.03
MSX1P28360 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC14.87□□□□□ -0.03
MSX1P28360 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX1P28360 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
MSX1P28360 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX1P28360 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
MSX1P28360 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX1P28360 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
MSX1P28360 HLA-H-201ENST00000383620 1096 ntBASIC14.87□□□□□ -0.03
MSX1P28360 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX1P28360 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX1P28360 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC14.87□□□□□ -0.03
MSX1P28360 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC14.87□□□□□ -0.03
MSX1P28360 AC245100.5-201ENST00000452108 331 ntBASIC14.87□□□□□ -0.03
MSX1P28360 AC125807.1-201ENST00000483097 614 ntBASIC14.87□□□□□ -0.03
MSX1P28360 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.87□□□□□ -0.03
MSX1P28360 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC14.87□□□□□ -0.03
MSX1P28360 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
MSX1P28360 AF228730.6-201ENST00000641497 218 ntBASIC14.87□□□□□ -0.03
MSX1P28360 AC084121.3-201ENST00000641716 218 ntBASIC14.87□□□□□ -0.03
MSX1P28360 AC105233.6-201ENST00000642093 218 ntBASIC14.87□□□□□ -0.03
MSX1P28360 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC14.87□□□□□ -0.03
MSX1P28360 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX1P28360 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC14.87□□□□□ -0.03
MSX1P28360 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX1P28360 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX1P28360 AC005052.1-201ENST00000625181 2492 ntBASIC14.87□□□□□ -0.03
MSX1P28360 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC14.87□□□□□ -0.03
MSX1P28360 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
MSX1P28360 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX1P28360 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX1P28360 CYP2T1P-202ENST00000641596 2535 ntBASIC14.87□□□□□ -0.03
MSX1P28360 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC14.86□□□□□ -0.03
MSX1P28360 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MSX1P28360 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC14.86□□□□□ -0.03
MSX1P28360 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC14.86□□□□□ -0.03
MSX1P28360 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC14.86□□□□□ -0.03
MSX1P28360 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
MSX1P28360 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC14.86□□□□□ -0.03
MSX1P28360 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
MSX1P28360 GOLGA2P9-201ENST00000596977 1937 ntBASIC14.86□□□□□ -0.03
MSX1P28360 GCK-209ENST00000616242 2260 ntTSL 5 BASIC14.86□□□□□ -0.03
MSX1P28360 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
MSX1P28360 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MSX1P28360 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MSX1P28360 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MSX1P28360 COPE-202ENST00000349893 948 ntTSL 2 BASIC14.86□□□□□ -0.03
MSX1P28360 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MSX1P28360 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
MSX1P28360 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC14.86□□□□□ -0.03
MSX1P28360 AC107890.1-201ENST00000422478 521 ntBASIC14.86□□□□□ -0.03
MSX1P28360 GPS2P2-201ENST00000430745 888 ntBASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms