Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC20.98■□□□□ 0.95
TRIM35Q9UPQ4 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC20.98■□□□□ 0.95
TRIM35Q9UPQ4 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC20.98■□□□□ 0.95
TRIM35Q9UPQ4 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC20.98■□□□□ 0.95
TRIM35Q9UPQ4 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC20.98■□□□□ 0.95
TRIM35Q9UPQ4 SUOX-214ENST00000551841 906 ntTSL 3 BASIC20.98■□□□□ 0.95
TRIM35Q9UPQ4 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC20.98■□□□□ 0.95
TRIM35Q9UPQ4 AC008738.7-201ENST00000609744 511 ntBASIC20.98■□□□□ 0.95
TRIM35Q9UPQ4 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC20.98■□□□□ 0.95
TRIM35Q9UPQ4 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM35Q9UPQ4 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM35Q9UPQ4 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM35Q9UPQ4 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
TRIM35Q9UPQ4 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC20.98■□□□□ 0.95
TRIM35Q9UPQ4 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 RAC2-204ENST00000406508 893 ntTSL 5 BASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 RAD18-204ENST00000418463 563 ntTSL 4 BASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 RAD18-205ENST00000421052 582 ntTSL 3 BASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 ZNF890P-202ENST00000530367 1156 ntBASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 AC008686.1-203ENST00000591826 463 ntTSL 2 BASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 AC004840.1-201ENST00000636359 365 ntBASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
TRIM35Q9UPQ4 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM35Q9UPQ4 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
TRIM35Q9UPQ4 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC20.96■□□□□ 0.95
TRIM35Q9UPQ4 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC20.96■□□□□ 0.95
TRIM35Q9UPQ4 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM35Q9UPQ4 AC011477.6-201ENST00000604980 1927 ntBASIC20.96■□□□□ 0.95
TRIM35Q9UPQ4 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC20.96■□□□□ 0.95
TRIM35Q9UPQ4 AC018695.7-201ENST00000624587 2492 ntBASIC20.96■□□□□ 0.95
TRIM35Q9UPQ4 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM35Q9UPQ4 FO393414.2-201ENST00000405153 598 ntBASIC20.96■□□□□ 0.95
TRIM35Q9UPQ4 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC20.96■□□□□ 0.95
TRIM35Q9UPQ4 TMPRSS11CP-201ENST00000453277 683 ntBASIC20.96■□□□□ 0.95
TRIM35Q9UPQ4 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC20.96■□□□□ 0.95
TRIM35Q9UPQ4 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC20.96■□□□□ 0.95
TRIM35Q9UPQ4 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC20.96■□□□□ 0.95
TRIM35Q9UPQ4 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM35Q9UPQ4 EHF-205ENST00000527935 557 ntTSL 2 BASIC20.96■□□□□ 0.95
TRIM35Q9UPQ4 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC20.96■□□□□ 0.95
TRIM35Q9UPQ4 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM35Q9UPQ4 AC004790.1-201ENST00000612686 536 ntBASIC20.96■□□□□ 0.95
TRIM35Q9UPQ4 RAB34-223ENST00000636154 730 ntTSL 2 BASIC20.96■□□□□ 0.95
TRIM35Q9UPQ4 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC20.96■□□□□ 0.95
TRIM35Q9UPQ4 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM35Q9UPQ4 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC20.96■□□□□ 0.95
TRIM35Q9UPQ4 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM35Q9UPQ4 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM35Q9UPQ4 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
TRIM35Q9UPQ4 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM35Q9UPQ4 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
TRIM35Q9UPQ4 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
TRIM35Q9UPQ4 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
TRIM35Q9UPQ4 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM35Q9UPQ4 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM35Q9UPQ4 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC20.95■□□□□ 0.94
TRIM35Q9UPQ4 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
TRIM35Q9UPQ4 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC20.95■□□□□ 0.94
TRIM35Q9UPQ4 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM35Q9UPQ4 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM35Q9UPQ4 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM35Q9UPQ4 AC022144.1-201ENST00000602255 1580 ntBASIC20.95■□□□□ 0.94
TRIM35Q9UPQ4 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
TRIM35Q9UPQ4 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM35Q9UPQ4 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM35Q9UPQ4 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC20.95■□□□□ 0.94
TRIM35Q9UPQ4 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC20.95■□□□□ 0.94
TRIM35Q9UPQ4 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM35Q9UPQ4 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC20.95■□□□□ 0.94
TRIM35Q9UPQ4 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC20.95■□□□□ 0.94
TRIM35Q9UPQ4 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC20.95■□□□□ 0.94
TRIM35Q9UPQ4 SERPINA7P1-201ENST00000443077 631 ntBASIC20.95■□□□□ 0.94
TRIM35Q9UPQ4 FXR1-221ENST00000491674 365 ntTSL 2 BASIC20.95■□□□□ 0.94
TRIM35Q9UPQ4 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM35Q9UPQ4 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms